| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026726 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072036 | Ga0207614 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A3-10 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 18403519 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 2 |
| All Organisms → cellular organisms → Archaea | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000268 | Metagenome / Metatranscriptome | 1411 | Y |
| F002103 | Metagenome / Metatranscriptome | 593 | Y |
| F002896 | Metagenome / Metatranscriptome | 522 | N |
| F003758 | Metagenome / Metatranscriptome | 470 | Y |
| F050525 | Metagenome / Metatranscriptome | 145 | N |
| F054151 | Metagenome / Metatranscriptome | 140 | N |
| F081936 | Metagenome / Metatranscriptome | 114 | N |
| F098176 | Metagenome | 104 | N |
| F103783 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207614_100084 | All Organisms → cellular organisms → Bacteria | 1028 | Open in IMG/M |
| Ga0207614_100089 | Not Available | 1022 | Open in IMG/M |
| Ga0207614_100160 | Not Available | 899 | Open in IMG/M |
| Ga0207614_100722 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 644 | Open in IMG/M |
| Ga0207614_101053 | Not Available | 591 | Open in IMG/M |
| Ga0207614_101326 | Not Available | 564 | Open in IMG/M |
| Ga0207614_101713 | All Organisms → cellular organisms → Archaea | 531 | Open in IMG/M |
| Ga0207614_101873 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 521 | Open in IMG/M |
| Ga0207614_101996 | All Organisms → cellular organisms → Archaea | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207614_100084 | Ga0207614_1000841 | F000268 | VMLLLSAGIAAEAVSYSFVSKASGRLGGPIRFEFYGDSTTLPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR |
| Ga0207614_100089 | Ga0207614_1000891 | F098176 | LSGDGIICGMSIVGTSEAYWLTGGGFTGWHQIHHEDENIALSTAAQLPPQCALVASYRNTSEVTVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRAAMNELNTALEAITDADPIFAPQGLAVVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQAAS |
| Ga0207614_100160 | Ga0207614_1001602 | F050525 | MRGFAGLLAYLAGISAIVGIGIVGLMALQAPTERAPSSPPVAAAEPLAKPAKRPLDDKKTAHRNQTHKKVHVTRKQHEAPSIDAGRNAYGYAEELRRIDPNRFLFFGR |
| Ga0207614_100722 | Ga0207614_1007221 | F103783 | MKISKFVWSVLVAFATVALIAPQQVEAIIVDGRVNGQIQLTGSGTITESTGINSTGINSNGINRL |
| Ga0207614_101053 | Ga0207614_1010531 | F003758 | LSPNVLRAFENAEDEILMNTLKGAPRLDVPSLFRPQFMAEVQKEHPEYFADLPPLK |
| Ga0207614_101326 | Ga0207614_1013261 | F054151 | DQYTLADHFRALAEGLSLRAVSERAPAQRAELQRLAECYAELAKQQSPADHFARGVGPR |
| Ga0207614_101713 | Ga0207614_1017131 | F081936 | SKTIVDIALNVIXLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT |
| Ga0207614_101873 | Ga0207614_1018731 | F002103 | DYELLKGVDYIFVSLDRNLSGEECHELAEKYFETHKQMTLPGQLLLVDLRPAFGKPLADVTPKFRAVSIGYTFTPQR |
| Ga0207614_101996 | Ga0207614_1019961 | F002896 | LHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDTNPRLCKEGTIFHQDLYNECVKTFKDLLIHSDAQHH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |