| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026674 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053063 | Gp0054369 | Ga0207924 |
| Sample Name | Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN356 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 7183270 |
| Sequencing Scaffolds | 11 |
| Novel Protein Genes | 11 |
| Associated Families | 11 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | grassland biome → land → grassland soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Chapel Hill, North Carolina, USA | |||||||
| Coordinates | Lat. (o) | 35.913 | Long. (o) | -79.056 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000810 | Metagenome / Metatranscriptome | 882 | Y |
| F005544 | Metagenome / Metatranscriptome | 397 | Y |
| F016050 | Metagenome / Metatranscriptome | 250 | Y |
| F022560 | Metagenome / Metatranscriptome | 214 | Y |
| F024895 | Metagenome / Metatranscriptome | 204 | Y |
| F027644 | Metagenome / Metatranscriptome | 194 | Y |
| F039700 | Metagenome / Metatranscriptome | 163 | Y |
| F055938 | Metagenome | 138 | Y |
| F078268 | Metagenome | 116 | Y |
| F089322 | Metagenome / Metatranscriptome | 109 | Y |
| F099559 | Metagenome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207924_100197 | Not Available | 853 | Open in IMG/M |
| Ga0207924_100313 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 740 | Open in IMG/M |
| Ga0207924_100321 | All Organisms → cellular organisms → Bacteria | 737 | Open in IMG/M |
| Ga0207924_100521 | All Organisms → cellular organisms → Bacteria | 653 | Open in IMG/M |
| Ga0207924_100646 | Not Available | 611 | Open in IMG/M |
| Ga0207924_100709 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 591 | Open in IMG/M |
| Ga0207924_100760 | Not Available | 577 | Open in IMG/M |
| Ga0207924_100795 | Not Available | 570 | Open in IMG/M |
| Ga0207924_100814 | Not Available | 566 | Open in IMG/M |
| Ga0207924_100863 | Not Available | 556 | Open in IMG/M |
| Ga0207924_100877 | All Organisms → cellular organisms → Bacteria | 553 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207924_100197 | Ga0207924_1001973 | F039700 | MLYEVVILETPTKKEAEEGKSERLVFGPKAIIGNDPQSAAIAAVLDGNNGEKIDVDRSRMKVLIRPFA |
| Ga0207924_100313 | Ga0207924_1003132 | F027644 | MNIAELKGEKTVKTLAKRLLAEPSKKTKKTTNAEMEAALLRLNPQLNQIRELKEGTPIVVPVEFPLDGDESFTPSRGLTEALLEQARDAVTKLRAVVKERVQNSAEEADRVQTWLKSAQAKEFLRQSPELKESFSSAATAAKTLAKEQAEAFSAEENALGKIKSQLTAFRVK |
| Ga0207924_100321 | Ga0207924_1003212 | F005544 | MPSGGKKKHKKPSRKKSELDSALAQVGDESSAAAIQEFQDLLGEAKGDTSELVRQNAEELERRLVLLKNHEIDKED |
| Ga0207924_100521 | Ga0207924_1005211 | F016050 | MQLKANVEDEDRAERGKNDTGGMKSSARRRKQVGNRTADDRSDDAERDGP |
| Ga0207924_100646 | Ga0207924_1006462 | F055938 | KWVRVDKLQPGDRVQDAKGNIVTIKEASPGIFPDSILITLQDADPDFLYLESDTKVFVE |
| Ga0207924_100709 | Ga0207924_1007091 | F089322 | MVNGVDALSITWMILTQARWLKVRFKMTMRQLARWCDGFIRWLSKSSVRIGRVEPRR |
| Ga0207924_100760 | Ga0207924_1007601 | F078268 | RVSGVALDLEMGVPCYQVEDEEGRIHLLLQLPIGEKNENRWCLWRPHRVVFDSRSIFDVALIDG |
| Ga0207924_100795 | Ga0207924_1007952 | F024895 | MSTTNQMNEINNLSSEFTDEFLHTQADAGHHLLGQESFEHRPTQEEMKALALEGVSLLFIDCLK |
| Ga0207924_100814 | Ga0207924_1008141 | F022560 | WRQGARSGAYLNRYVTDEQRSRRPIFIATLRAVASWPFFRVARSLRIHSDMLVARALKNSQLIRQLPGESHAIYGTGLGQSDEN |
| Ga0207924_100863 | Ga0207924_1008631 | F099559 | LPLPGDPPARYRSPRFHWPKISPSRLRDGVKPAIAGTVALLICQWFNPPGAAAIPLTALALTFMNKNFIGGKGDRGALQSAFQVSVGGLIFVILVFWISPALSNYGMMNLFLFTELFAFGYWSAALGGQNIHAGAVMFFIIASVGLDAEKPVAVQTVFGSYFGIVLPIFMAAIVGRLFWPVLPEA |
| Ga0207924_100877 | Ga0207924_1008771 | F000810 | MKSKHSFSRNVLLMLVFGCAIVISSVAQGGPPPAYLRSNHHFPPGLLVVDRTPNFGWNLGFNLLIDGRPAGSVAQGHSYSTWLPAGPHVLTVHKVPATGFTAPTSTTVNIQPGAEHLYTAMWDSGLVYLQPGGVLLTPGAYWQNHGD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |