Sample 3300026488

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300026488

3300026488: Hydrothermal vent microbial communities from Guaymas Basin, Mexico - 4571-419

Overview

Basic Information
IMG/M Taxon OID	3300026488 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046784 \| Gp0296303 \| Ga0256838
Sample Name	Hydrothermal vent microbial communities from Guaymas Basin, Mexico - 4571-419
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	304035269
Sequencing Scaffolds	0
Novel Protein Genes	2
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → rock
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0105	Long. (^o)	111.40683	Alt. (m)	N/A	Depth (m)	1990
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016973	Metagenome / Metatranscriptome	243	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256838_1016733	Ga0256838_10167331	F016973	MKLFATLAAVASASWNGVSEDNSCGMQIAGDSMVNATCTISGSNIAYQFAGNGAFITGANTFTGFDGASGDVDMVVFFEQDCSSGECDNSTCWDASVSCVDNGAATAGVFFMETVNDHRGAKGGNVNLQIAGVSAGDTLAIDLNGFACQNISAPFGTVSATEDAWGNQYSDDGTFSVQVGADAVFGDLFQISITQQPGQTSALNLWASSVSN
Ga0256838_1141793	Ga0256838_11417931	F016973	YGSEISTMFAGAGAFITGANTFTGFDGLSGNVDMVVFFEQDCSSGECDNSTCWDARVSCVDNGAASDGVFFMETVNDHRGAKGGNFNLQIAGVSPGDTLAIALNTDMAGFACQNISAPFGTVSAQADAWGNQYSDNGAFSVTVGDEPFGDLFQISITQQPGQTLALNLWASTVEN

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