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Sample 3300026399
3300026399: Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S4 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300026399 Open in IMG/M GOLD Reference Gs0132855 | Gp0267204 | Ga0232082 Sample Name Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S4 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 77217205 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 1 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa Type Engineered Taxonomy Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) na → na → na
Location Information
Location USA: New York Coordinates Lat. (o ) 42.4447 Long. (o ) -76.485 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F043478 Metagenome / Metatranscriptome 156 N F077462 Metagenome / Metatranscriptome 117 Y F103516 Metagenome / Metatranscriptome 101 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0232082_122755 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae 748 Open in IMG/M Ga0232082_133669 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 532 Open in IMG/M Ga0232082_135644 Not Available 507 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0232082_122755 Ga0232082_1227551 F043478 VSAMDPYDGHSAWKFQYSHPVKAEAKGRRISLLSWLANLVFLSGTLLFAYQFYGWFEHNEWTRYPSIALVKYLPAGCVGFLNEVSAVKASMLWLLDRADLSVILILMGFLIAKFLVDSK Ga0232082_133669 Ga0232082_1336691 F077462 AILILFFGPLAVERTFCDVTRELKKLSEEREKSVGYAKIAKVSFKKQPKKLTHAMLYYTDAKSIGNPIIQQLQTSLASRSMKESQLREMLSEDVKRLVTVNEKFRAFIESGSSSNRALPGLAAVAGMAGPITDACVNLWKEYKDADKKRVDAMVEVLEGYKWADWDKI Ga0232082_135644 Ga0232082_1356441 F103516 MRTALILFLAALLAGCGAATNVQVMKPVNGEIQSFLTPELLKSRCYNFMSAGREGEMIAKKSNVLLNECNLTAKDAVNRVTYLTYTTKDAYVAESGENQVISKRVMGNKDIEIESRLFYEKEGGVRGIQVLINDFVDKNYVKGYEPEWVVRALYREVKLQ
