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Sample 3300026388
3300026388: Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.SFe4 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300026388 Open in IMG/M GOLD Reference Gs0132855 | Gp0267205 | Ga0232083 Sample Name Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.SFe4 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 58354268 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 2 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa Type Engineered Taxonomy Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) na → na → na
Location Information
Location USA: New York Coordinates Lat. (o ) 42.4447 Long. (o ) -76.485 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F021795 Metagenome / Metatranscriptome 217 Y F031111 Metagenome / Metatranscriptome 183 N F034230 Metagenome / Metatranscriptome 175 Y F103516 Metagenome / Metatranscriptome 101 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0232083_102414 All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes 3204 Open in IMG/M Ga0232083_119938 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 671 Open in IMG/M Ga0232083_127373 Not Available 525 Open in IMG/M Ga0232083_128313 All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 511 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0232083_102414 Ga0232083_1024141 F031111 RRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP Ga0232083_119938 Ga0232083_1199381 F021795 RQNRMKKEADRIRRWRERKKAEGKSSFTVVLSHQAREILAEEKEKTGESYAVIMEKALLGLKKQGYTPPILRHFPRREEVLARVAAQDSPPAPASNAGRVNHEGDRQPRILIDDLANYPTLEDIEREQAAKELNGVHDLKSSEGLITRLLRSSAGPFGRKKKWFK Ga0232083_127373 Ga0232083_1273731 F103516 MRTALILFLAALLAGCGAATNVQVMKPVNGEIQSFLTPELLKSRCYNFMSAGREGEMIAKKSNVLLNECNLTAKDAVNRVTYLTYTTKDAYVAESGENQVISKRVMGNKDIEIESRLFYEKEGGVRGIQVLINDFVDKNYVKGYEPEWVVRALYREVKLQDGKIVVV Ga0232083_128313 Ga0232083_1283131 F034230 IIMRRLLFVLMLSGFVLFGAAAPARSAEAGPETNKLKVKVGPFFIQESDKKISLEGAAPYVIRKGKRVNITVTVENYGKEKSEPVRLRYVETDGKAGEPRLYRVEAIEPGKKWQRTFMARWDTSGRKSVTAALVTLEDKPLRDAKGKPRPDTAHTGSIVLTAKQM
