NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026348

3300026348: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 C6



Overview

Basic Information
IMG/M Taxon OID3300026348 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133548 | Gp0296346 | Ga0256813
Sample NameSediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 C6
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85420792
Sequencing Scaffolds29
Novel Protein Genes31
Associated Families31

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae1
Not Available12
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium2
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)31.3377Long. (o)-81.4644Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000926Metagenome / Metatranscriptome832Y
F005189Metagenome / Metatranscriptome409Y
F006471Metagenome372Y
F008090Metagenome / Metatranscriptome339Y
F008880Metagenome / Metatranscriptome326Y
F009814Metagenome312Y
F009862Metagenome / Metatranscriptome312Y
F010066Metagenome309Y
F010100Metagenome308Y
F012232Metagenome282Y
F014750Metagenome / Metatranscriptome260Y
F015523Metagenome / Metatranscriptome254Y
F017153Metagenome / Metatranscriptome242Y
F024002Metagenome / Metatranscriptome208Y
F026596Metagenome197Y
F044577Metagenome154Y
F049080Metagenome147Y
F051242Metagenome144Y
F054982Metagenome / Metatranscriptome139Y
F057187Metagenome136Y
F058254Metagenome135Y
F061015Metagenome132Y
F061948Metagenome / Metatranscriptome131Y
F065901Metagenome127Y
F065907Metagenome127Y
F071802Metagenome / Metatranscriptome122N
F076809Metagenome117Y
F080207Metagenome115Y
F085862Metagenome111Y
F094061Metagenome106Y
F097602Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256813_1001772All Organisms → cellular organisms → Bacteria → Terrabacteria group1365Open in IMG/M
Ga0256813_1002350All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae1256Open in IMG/M
Ga0256813_1003331Not Available1126Open in IMG/M
Ga0256813_1003360All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1123Open in IMG/M
Ga0256813_1003491All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1108Open in IMG/M
Ga0256813_1003762Not Available1078Open in IMG/M
Ga0256813_1004256Not Available1034Open in IMG/M
Ga0256813_1006338All Organisms → cellular organisms → Bacteria895Open in IMG/M
Ga0256813_1006592All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium883Open in IMG/M
Ga0256813_1006930All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria867Open in IMG/M
Ga0256813_1007671All Organisms → cellular organisms → Bacteria837Open in IMG/M
Ga0256813_1008571Not Available805Open in IMG/M
Ga0256813_1012157All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium709Open in IMG/M
Ga0256813_1013134Not Available689Open in IMG/M
Ga0256813_1013876All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus676Open in IMG/M
Ga0256813_1013924All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium675Open in IMG/M
Ga0256813_1017381All Organisms → cellular organisms → Bacteria624Open in IMG/M
Ga0256813_1018006Not Available616Open in IMG/M
Ga0256813_1019065All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium603Open in IMG/M
Ga0256813_1020915All Organisms → cellular organisms → Bacteria583Open in IMG/M
Ga0256813_1021035Not Available582Open in IMG/M
Ga0256813_1023729Not Available558Open in IMG/M
Ga0256813_1024518All Organisms → cellular organisms → Bacteria551Open in IMG/M
Ga0256813_1025238All Organisms → cellular organisms → Bacteria546Open in IMG/M
Ga0256813_1025923Not Available541Open in IMG/M
Ga0256813_1026432Not Available537Open in IMG/M
Ga0256813_1027937All Organisms → cellular organisms → Bacteria → Proteobacteria526Open in IMG/M
Ga0256813_1029227Not Available518Open in IMG/M
Ga0256813_1030071Not Available512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256813_1001772Ga0256813_10017722F057187MTKPQGSKNIPEMFADERVMEWMEEHLPELKEYVSGQRLLYQSLVIGSVVGLAAHIGGYFLRSSLPEGFPELLADLLYALGWSLWTGVVVAVFTQVIPEAKRRQIKQSL
Ga0256813_1002350Ga0256813_10023501F097602SKPDILTVTCCRNEGRKIEKRVTILPSEGPSALGRCNCDTLSPKRNSNVGVMNRGSADEAVVIVKFDADEPMVTWRRVKHRISDRKLEVKGGTCKRPWPLIIDWRTEISRTGAVDYLRRK
Ga0256813_1003331Ga0256813_10033311F012232MKLKFKAVLMNIAVLLVISSWANITEGQEGYFNWKTGQELPSVVELKLLSMDIPQSWTLSTNIEYWATIKFETDRNLKIQRACFNFSDRSESCVDVQAKDVTYSSHPYFRVAIHIPVGTKKVDCYAEYIQEGKTRRTNTVTYTIIVLKKPEE
Ga0256813_1003331Ga0256813_10033313F009814AWFDFLTDTWENVFVAGVFVEVKVGDVYIRHSDGKSYRVKRIDYKMVVLESLESEPGTRLRLTDFFGLEKAYSKRTSKPARESP
Ga0256813_1003360Ga0256813_10033602F054982MELKPLSPELNELRNVVISSNLASCYLILELLKSDRDETLNYEKFRDQWIGVYKSTYGIVSRMKPRKSSR
Ga0256813_1003491Ga0256813_10034912F044577VIERESMKTILGGVLAASLSVSPAFAQSSSGAWNGLSDRFRIDAGYFGLTAENVLNYHGGDVDFEKDLGLDKGVNTFWVDATWRVGRRHQLKLSYTRFARDRAGYTLGRDFVWGGETYNAGLSATTTSGSDILGGYYRFAVYRNNRFEIGPTIGVGYLWLNARIQATGTVGGPGGSQSRELDESASTGAMTGSLGGYTNGWITKRLAARADFLYIKVSPESKTESVTDWRIGADYYFFRNAGLGVQYKYNKYRKTY
Ga0256813_1003762Ga0256813_10037622F061015MAERKGQRRVRCENQYVYDRLSSQKMSQVYHWLVPDDEAGHEPLAEVTTAENEKDRSHLRPSFL
Ga0256813_1004256Ga0256813_10042562F080207MTMRKTSIVVTLCLVLMGMLTAIGEVTAAPTDDSSIQRFDIAVGDYKYGELSVDEKTDHVSAYANVGSSSADKQVTLVARKDRSSPHTIDIAHSTVNSDGQVFWKGTLTAAQVDWIHTYGGRAVFFFRVNHSLL
Ga0256813_1006271Ga0256813_10062711F015523VIPVPKGELIISPDGREATLEMKNIAVVDQPKWPALDAVGMPAVMSFKMTWKATDEKITYDDPQKQFRVEGYRAESQLEAQVEVPSIAFSWKSDPLSASHANFAIIGDEVNGRYYSPLK
Ga0256813_1006338Ga0256813_10063382F009862MPKPRDEKPLTVRCPNCKQAGEPDFNETTRHYVCPICSASLDAQVFIEKKKRGLK
Ga0256813_1006592Ga0256813_10065922F085862MSHLAEKSERNPATTEPEEKQWEIFDNREASLRNQKHLEMAYEWLRNKGKTDLLKGASES
Ga0256813_1006930Ga0256813_10069301F058254QLTDREWKWLWEYTRTGSNASQAARIACGGTPISVRVKGHKKVKLKLISDKIDKILDQFLVKEISQIEKEVDAYLKRLKRRIRKSL
Ga0256813_1007671Ga0256813_10076712F010066MVLVFLTGSCASGPKANINNIDWRSRIGTYTYEEALAEFGEPDVISETSEGTIAEWVLRQSPMVSFGFGFGGVGYGPHTSTGVGVGTSVSPPPSGEYLHLRFDRDGKLVESSRVRY
Ga0256813_1008571Ga0256813_10085712F065901MAESWPVPQGVRVAPDGSWTVGEFRIVHAPSLRFLKERLVFEDAGAFLVQGDKRMPVAVEGPAFEVVELRLVPDAGEAHAVLDDGSVEVLGPDSLSTDAVTGRAECTARGGRARAVFSRGAHQALLQHVEEAGGCYFLRVGQ
Ga0256813_1012157Ga0256813_10121572F024002MAAVVALILMASQDRGSADLDGAHDSQRIAGYPMGVSIGRAVLTEDLRNLKAAGGSHPSSLRDRFGGSIEGTDDLGQVQPTDVQIDGGRCGRSVAQKHLDMMEARSRFNQVGRKAVS
Ga0256813_1013134Ga0256813_10131342F017153MTIVVGDRIKNKLTQDLFKISKIENERVVMLEDEKGLVRIWFPKQHLGSYFEEVKGR
Ga0256813_1013876Ga0256813_10138762F008090MRRGRITWLFLFAGLILIFSSCHPRHVSDVKPNMTKEEVASLWGG
Ga0256813_1013924Ga0256813_10139241F049080MPKDLIAKIALSKEEIAHLYQGGVLSVKIKGKDTDASVEISCREVSERKGTRIRFKTIEA
Ga0256813_1017381Ga0256813_10173811F061948MTTGEKLYGAVATLATADAPLKERLSSAFRSHLLGLTPQEFAEVGLQTDFESLYVNAESGKVLRTEWLSEEECQRASQTILHLFVEVTRTIEQEDFEGWLKNRLLGGS
Ga0256813_1018006Ga0256813_10180061F051242MMKDDAPSRADDEEPLGLTIYKPEGQVCQKLHLCEYLRELYEAAEHENELGAAKKKDFRRHATKGCD
Ga0256813_1019065Ga0256813_10190651F014750RVGRRHQLQLGFTRLSRDHNSRTLSRDFTWGGQTYNAGLSATTTSGSDVLGGYYRFAIFRNDRFEIGPTIGVGYLWLNANIKATGTVTAPDGSEESRSLDEGTSTGSITGAIGGYAEVWPAKRFVVRGDFLYIKVKPEHSDASVKDWRIALDYYFTPTFGVGAQYKYNRYTYDRGILQSSLGGELTFDGGQVFLSFRF
Ga0256813_1020915Ga0256813_10209152F000926LAVQQLEVLVRTAVFKSANALVGFLLQEAADRIDTDYQAKPGQQYKGRVSLQVEGMFGSFALERDYYYHPGKEQGHYPADAALGLENGHTPALTRLMCLEGADETSYQ
Ga0256813_1021035Ga0256813_10210351F071802MGANTSKPNYASLFTKILIVLVILNIAGDVLAAAFFLWDPSLGELSVYGGLIASFAGQNGAVMITSAILLGYAVVYAVSVFGLLSKLKWAPPLVIAVSVVNRALALGVVFEPNVAWLIWSAWKLVIIALAFYI
Ga0256813_1023729Ga0256813_10237292F006471MSMDGRPPNKRMQLTKLRAAPVWQAEVPPCAPAGKVGGGTASQLIRR
Ga0256813_1024518Ga0256813_10245182F010100MTGLNPSFFYLEPQVEQLEEAQLPQEELAVLLNFPPTEKAKADMTRRTFLLLHLGQAIFSELFNTNF
Ga0256813_1025238Ga0256813_10252381F008880SFPKPKTQDAARREAAWAMIRWITDHVAEWTLRAGQVSASRKSHTDPRITGDPALRTLLAQGPYWQHGQSTPKWVPAENLTRPVIENLYIGQKGAQASMEDLARQINALPD
Ga0256813_1025923Ga0256813_10259231F005189MKAFLIGTAIIGLIVHLILRPVFAQDIDPRCKDVYDKVACGCALQNGGRIIPPPVGVKREGLKLRPREGQEPTQTLDGGRVAFPKYFRREGFKVHRSRALEGYVACMHSNGRK
Ga0256813_1026432Ga0256813_10264322F065907MKKNILILVCLGILVVLPNLLLADCADLGGFTSFSITGGSTVTLYAGNTPFVRFDVQCSIESTSRLQLIRGYVCDGDEVLVDGSSCTILNVNSSID
Ga0256813_1027937Ga0256813_10279372F094061MGESENDVEVGSGEEFGFTFFKPSLSGDVLTLGAVSIAAGVIEDTLCAAVGAALDVATQGGGAAVKEVGDDPVLIWG
Ga0256813_1029227Ga0256813_10292271F026596ASAVEKQAAVLDEMWSSLTVERPDRYPVKKWEAQKASLGIPASWRETRSFSGGGTLVTSYVSPALAVEKERQTVHASLAVTFEPVPEGGGLAEYYEATRRRLGDNFQVRSHAAFRGGYVDTMRTETPVAVTYVKRFYFAQGGRGCSLSFEAPEDVFPRASRWADFIASTLAF
Ga0256813_1030071Ga0256813_10300711F076809VRSSTQQVDMFRGMKNPKSLFALIISLSVPILSGYLLYCDLADEDPFSSDAQYENADIDDLFNVPNCENQLKFSGSIESNALFPLFLLETNAIEQVSPFCSLSSCLEQKNLVLRC
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