NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026196

3300026196: Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026196 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114514 | Gp0125949 | Ga0209919
Sample NameSoil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size423605485
Sequencing Scaffolds35
Novel Protein Genes39
Associated Families38

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2
Not Available11
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSalt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomewetland areasoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSouth San Francisco, USA
CoordinatesLat. (o)37.4965Long. (o)-122.1329Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001784Metagenome / Metatranscriptome635Y
F002422Metagenome / Metatranscriptome560Y
F003875Metagenome / Metatranscriptome464Y
F005789Metagenome / Metatranscriptome390Y
F010008Metagenome / Metatranscriptome310Y
F015635Metagenome / Metatranscriptome253Y
F017250Metagenome / Metatranscriptome242Y
F021199Metagenome / Metatranscriptome220Y
F022710Metagenome / Metatranscriptome213Y
F022919Metagenome / Metatranscriptome212Y
F022996Metagenome212Y
F026738Metagenome / Metatranscriptome197Y
F029285Metagenome / Metatranscriptome189Y
F030290Metagenome / Metatranscriptome186Y
F032088Metagenome181Y
F032367Metagenome / Metatranscriptome180Y
F036211Metagenome / Metatranscriptome170Y
F037370Metagenome / Metatranscriptome168Y
F045813Metagenome / Metatranscriptome152Y
F047069Metagenome / Metatranscriptome150Y
F048463Metagenome148Y
F050600Metagenome / Metatranscriptome145Y
F051509Metagenome / Metatranscriptome144Y
F056029Metagenome138Y
F056659Metagenome / Metatranscriptome137Y
F059554Metagenome133Y
F062881Metagenome / Metatranscriptome130Y
F065641Metagenome / Metatranscriptome127Y
F067235Metagenome / Metatranscriptome126Y
F069642Metagenome / Metatranscriptome123Y
F071270Metagenome / Metatranscriptome122Y
F074459Metagenome / Metatranscriptome119Y
F084079Metagenome / Metatranscriptome112Y
F085674Metagenome / Metatranscriptome111Y
F086281Metagenome111Y
F088925Metagenome / Metatranscriptome109Y
F097083Metagenome / Metatranscriptome104Y
F104731Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209919_1003107All Organisms → cellular organisms → Bacteria7249Open in IMG/M
Ga0209919_1008160All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3777Open in IMG/M
Ga0209919_1008748All Organisms → cellular organisms → Bacteria3594Open in IMG/M
Ga0209919_1014798All Organisms → cellular organisms → Bacteria2547Open in IMG/M
Ga0209919_1015145All Organisms → cellular organisms → Bacteria2504Open in IMG/M
Ga0209919_1015495All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2467Open in IMG/M
Ga0209919_1016998All Organisms → cellular organisms → Bacteria2329Open in IMG/M
Ga0209919_1017790All Organisms → cellular organisms → Bacteria2261Open in IMG/M
Ga0209919_1023254Not Available1907Open in IMG/M
Ga0209919_1024132All Organisms → cellular organisms → Bacteria → Proteobacteria1864Open in IMG/M
Ga0209919_1024677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1841Open in IMG/M
Ga0209919_1024760All Organisms → cellular organisms → Bacteria1836Open in IMG/M
Ga0209919_1026260All Organisms → cellular organisms → Bacteria1775Open in IMG/M
Ga0209919_1037391Not Available1443Open in IMG/M
Ga0209919_1037743All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1436Open in IMG/M
Ga0209919_1057414Not Available1130Open in IMG/M
Ga0209919_1065820Not Available1047Open in IMG/M
Ga0209919_1073297Not Available986Open in IMG/M
Ga0209919_1076764All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria961Open in IMG/M
Ga0209919_1082810Not Available921Open in IMG/M
Ga0209919_1088257All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium888Open in IMG/M
Ga0209919_1098778Not Available834Open in IMG/M
Ga0209919_1104725All Organisms → cellular organisms → Bacteria807Open in IMG/M
Ga0209919_1105506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium803Open in IMG/M
Ga0209919_1106390All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium799Open in IMG/M
Ga0209919_1113709All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium770Open in IMG/M
Ga0209919_1121152All Organisms → cellular organisms → Bacteria → Proteobacteria742Open in IMG/M
Ga0209919_1137181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium691Open in IMG/M
Ga0209919_1169576All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium611Open in IMG/M
Ga0209919_1171353Not Available607Open in IMG/M
Ga0209919_1175234Not Available599Open in IMG/M
Ga0209919_1177187All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium595Open in IMG/M
Ga0209919_1187501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium575Open in IMG/M
Ga0209919_1190496Not Available570Open in IMG/M
Ga0209919_1206227Not Available543Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209919_1003107Ga0209919_10031071F032367MSRKRDIKQFRQACKGAGLTAQERREASEALHAEKQGGHVQRDMSYGELLDWLRQWRG
Ga0209919_1008160Ga0209919_10081602F021199VETLTETLTERVDRLIQARKVPLEWGSPHLSVTPKSVAIPQLAAEIAALEDAVREIALEVERLSGQG
Ga0209919_1008748Ga0209919_10087484F015635MQASSRSSFQPAEAGAILAGAVGICAGGGALVGWAAGATRYGVLGGVVAGLPAGVFAVYRRFKGYFS
Ga0209919_1009662Ga0209919_10096622F037370MWEVLRWFAVFVLALLLIVAGLFWLMGRPLPIPNF
Ga0209919_1014798Ga0209919_10147982F071270MADAYSLAKQHLDAGIAEAAENNIDLNAYGQALVWKLLERYKEAGRTGADIVSEMQYTLDNLDDDGTFHVSRN
Ga0209919_1015145Ga0209919_10151453F062881MNTSTTTAADLLAQIARIPLMERGKLSSYRPKHRPADAGPYHKLQTWERGKNHTRHVRSEQVPLLEEALAGYARFCALTEQYAQLVIEETRQQLAGVGEKKRPGPRPSSSRRRRRKSGD
Ga0209919_1015495Ga0209919_10154953F085674MSVSNASEAGWPCDRLRRGPGESLLLTIALMAVAVAGFTAVTATLTPPGGAWHPAMRIRQRAIVSTAFNVMFESLAPSIAFLWIGDERATVVVASAGVAVYATGIVIWRGRQFMRAGGNRTPSAIVLFTLGPTATLLFWANALVVGSVAIYALALCIQLTVAVVSFYSLVSATQS
Ga0209919_1016998Ga0209919_10169983F022919PSPAANPTPPRRGVPLTGPAQLGLGLAICIVALAAFFPQVVDASEASTRYHHLDHAGHFLLGIMAGLLLGSTPAISRRLGERPTLGLAAVLAAPVLMMLVMVPRFYEPLERHPFEHALYHLAMASCGLVAGLGATRLGLVAGRFAAFLAVGMALMFAAAMTGA
Ga0209919_1017790Ga0209919_10177905F026738MGTTRAAPLAGVYQKVTLGATSKILGGGKYSISGMTRNTMETSEFGDDVDVFEFTNANGGTITLEDVTYDPTDPEQNTLRACLQNKTKLIYSETSGIRFWLDSTSYMTIGTSGSILIVQAGKVEADRSGIAKTSFQGQVSGAFMMIV
Ga0209919_1023254Ga0209919_10232542F059554MRRYFAGITPVARPVGLLALGLSVITSALAAVPASPMASPVYDYAKPELLTGTLYAIGSHRQKVLYTFRRTARRTGAIVHIQRQFLGTNGTLAVVEKVLYESNRLVSDEMLDFQAGVSGAIRIEPDPENPARQRIFISYAHNLNPPKGRGRILQPDTVIDDTLYPFMMDHWEDLMQGKTVKFQFVSLDHERTYQFELVKTGESVQNHQPVVKITMQPTSFFIAMFVKPIIFTVQKNGAHHILSYIGRTTPRIRQGNSWKELNAETVFNYLKE
Ga0209919_1024132Ga0209919_10241323F001784MGDVIRVEFGTEREWERTRAQWADGLSAIGALFGDDEQLMRAKAECVYQVLRQMVEDVPTVRILAHLPEDLPAEQVELLTGAIREAALKGIETSMTHSVRVVMAAVYDLCTSKLREHPS
Ga0209919_1024677Ga0209919_10246773F005789ASPLNVLRSMRGSIVDARIAYPEVLHVEIKDSAGELWQLATQDAEWSPSDPTELVGRSVDDADIDAETGELRCKLSDGSVLDVKPAAREAEDDPPNWELITPGGVVLEFGPGVRWQIGSADSRAS
Ga0209919_1024760Ga0209919_10247603F067235VETVTTRQEDGTVDIQERAPAAAIPDEQRLEELYGTGIRRATLGLARFSSDTIRLRGVEPAILRFGPSIDSRRTILGGIVARRPGGTIAWRAGSEHSSVAVEGFAPLLRGPLWRLETSFHDLVGRRFLARVTREAP
Ga0209919_1026260Ga0209919_10262603F017250VSHPPLSTTPTAEKPALSEAQRAERLRLLARRLRSPEGLDRDALKHIERLTGDER
Ga0209919_1037391Ga0209919_10373912F002422MQNMETLSLRATRVVAAPTARQGGGGSIEKTEQAKAGV
Ga0209919_1037743Ga0209919_10377432F086281MAAPKPSVRSTTLSRQERRPQDLDEQHFGEIDVAMLYIEEARTRAERAAEALRRGGADEHLVEALEKAQDELSDVARRLRQGTLFAVPKEQLSL
Ga0209919_1057414Ga0209919_10574141F029285MKNQADYSKYKCPFAHVEKDCGHELNGPEGYENCESVWCPCGFRGPVFYLDPGELKLELIDGSGGS
Ga0209919_1065820Ga0209919_10658202F051509MYSTTTQHNGMAAVAVARAHYVGGVANDLMDAQGSWSIRCTVPATFHKPRPRRSQVTFS
Ga0209919_1070263Ga0209919_10702631F045813MSNVLGLLAFVLYILIVVAAAAGVTMLVVKFSPAKKKPDAAPKS
Ga0209919_1073297Ga0209919_10732972F047069MPRPPVERAGILAATGTGEPCSGAFAQDLNALWCPTCPKPTKNPGTGAVVQAQLWYRDPFSTSNQTTSLSDALEFTVAP
Ga0209919_1076764Ga0209919_10767642F003875MAWRKTGLYRSAEEILIMTCDVCERDVGFEDGRRPQEHFRVSRHPNRGAIDDQEAPAIICSRECLRAFAADVTGPDRASSPQRSGGAVGKPDRGG
Ga0209919_1082810Ga0209919_10828102F036211MVAQKSEAIRRAGWTLESDLDPVDEQLRRRRWRILRVALPQGHGLDPVPARITTPEQFVGWLVSRLSAQALMNYFEDLEEIAKQTCDLELLRLARKYLRR
Ga0209919_1088257Ga0209919_10882572F104731MPRDLAARMPEPASLLNYLTRNLKTVMKLTLVDAFSRFGAKPASRLGSLSAMAADGAMVLNCLPAHFGHPARGVLRYETKLSTAQAGTKIVTTLGEDLTRARERDLPVRMVVSIQEREKTGNKGCRYHVRPDLVGKVVEFDGDRFVVDFTRFQPARPAVTASRRK
Ga0209919_1098778Ga0209919_10987781F010008PVACVYQAYEDGALVATGRLMLDNLPQAGEELRLNGRVHVVREVAFSGGSYVLSLEPRA
Ga0209919_1104725Ga0209919_11047252F056029MSVLMSWARSTLANVENAFDRSDRWFDRMLVGTLVLLAVAIVLLFVAT
Ga0209919_1105506Ga0209919_11055062F030290RVKRSSDPRCHVGTRGHVTLFASYNGVRSDSVRFRFRGGCRAQDRLYHGAQVDNQVPPR
Ga0209919_1106390Ga0209919_11063901F048463MPSLPLYPTDDGWPYPDALSLDPGASTVGGPVPDADDGVDLDLLELRADPHAYADLTELEYFAVSWRYGVGDGAAPHSMKELAAELGCTRAEARDVLGGALDKLRRRLLTE
Ga0209919_1108734Ga0209919_11087341F084079TVYGYDGSGYTVGDRVELHPATDLGMRGVRYGTVTRLSLTPNDRVHVELDKRPGRTFAGSADTFRRVEG
Ga0209919_1113709Ga0209919_11137092F088925VQERKCSKCGSVNVYKNTSNNWHQDGVVLQMLAVGSFHDLFQTEAFLCLDCRNLDIQVAETSTMYGKQKPLVDTIQASNNWVKA
Ga0209919_1121152Ga0209919_11211521F022710MIELPAYLLALSFAAIGLAAWLLGRLTGAKRTVRLPRDYYVGLDHLINDRFDHAVEVFARMAETGDAAEIQFAL
Ga0209919_1137181Ga0209919_11371811F032088VDPDREEQVALHRWAVIAEAAAQQWTPAERGALVRAAAAQSHSHP
Ga0209919_1169576Ga0209919_11695761F065641DPQLQKCYESNLAEAGSFPGEERQVRALIATHEVFLMFEGAHSSRVHETIEHLLLPGLRPELRRWYQRTDAEKDLSAVVLRDHLSQLAGEKLESTTNTPDNNVEHGQSSRDI
Ga0209919_1171353Ga0209919_11713531F097083YQAPPAPASMLYFIGAEHMYPLEVPAGSPMATFELQVAPDTYQLVAFPIGSENLTNRTAAAYTTGSGIGVLTVSAGQVVEGIHVQNINSDRCVNYTFPASPDGRFPAIEENCSKLISETAPATVRGTITYQAPPSPASMLYFISGEQWYVQQVPGGSPAANFELQVAPGTYQVVAFPVGSENLTNRPAAAYTIGSGIGVLTV
Ga0209919_1175234Ga0209919_11752341F056659MNDETLQVFAGSAIDPEELLVLAEFAAPSHFVSDEHLRDAAENLADWTDHHPTTIHDARRLATRRDVRSSVVELLEEAAAVSGG
Ga0209919_1177187Ga0209919_11771871F069642DETLLAGKKDLGALAERTNALAARIEELHRQIQGTQNQEASNQETQRTIQELNAELKANSTELGCLRVEREELARVPCLGEGPYASCPKIRRAVEAGPKISDLEDRVTTLSLKVEVQQSSLVQIAAPSSQLTRTLQGCERDRAKLEQERLRYQELSAIEARRDERLKTFDHLSQNRREIAEELARKESALSAFADLGA
Ga0209919_1187501Ga0209919_11875012F050600MAILRPEEEARVRELFAELERPVELLVALGPEEMPLPGARDVDFGAEAVKIAEGLAELGELVTCRVEEEPDGFLRFPAIAIRPEGRDAGVRYDGLPWGYELGSLIGGVLEAGKRE
Ga0209919_1190496Ga0209919_11904961F074459QDLNALWSTTPAKNPGAGAVVQAQLWYRDPLNTSNQTTSLSDAIEFAVGP
Ga0209919_1206227Ga0209919_12062271F022996METIEKVNIAKIKADIKSMVEKQKFYKNQRKTERLVGKREISPSDATYKHFTNREDLRAMYAAYGLARGKSFSQVENKYPEENHPLNKYQGTIDRYLKKYTEKVKVEVEVQE
Ga0209919_1230662Ga0209919_12306621F037370MWEVLRWMIVFIAALLLIVAGIYWVLGRPLPIPSF

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