Basic Information | |
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IMG/M Taxon OID | 3300026196 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114514 | Gp0125949 | Ga0209919 |
Sample Name | Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 423605485 |
Sequencing Scaffolds | 35 |
Novel Protein Genes | 39 |
Associated Families | 38 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 9 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 2 |
Not Available | 11 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → wetland area → soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | South San Francisco, USA | |||||||
Coordinates | Lat. (o) | 37.4965 | Long. (o) | -122.1329 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001784 | Metagenome / Metatranscriptome | 635 | Y |
F002422 | Metagenome / Metatranscriptome | 560 | Y |
F003875 | Metagenome / Metatranscriptome | 464 | Y |
F005789 | Metagenome / Metatranscriptome | 390 | Y |
F010008 | Metagenome / Metatranscriptome | 310 | Y |
F015635 | Metagenome / Metatranscriptome | 253 | Y |
F017250 | Metagenome / Metatranscriptome | 242 | Y |
F021199 | Metagenome / Metatranscriptome | 220 | Y |
F022710 | Metagenome / Metatranscriptome | 213 | Y |
F022919 | Metagenome / Metatranscriptome | 212 | Y |
F022996 | Metagenome | 212 | Y |
F026738 | Metagenome / Metatranscriptome | 197 | Y |
F029285 | Metagenome / Metatranscriptome | 189 | Y |
F030290 | Metagenome / Metatranscriptome | 186 | Y |
F032088 | Metagenome | 181 | Y |
F032367 | Metagenome / Metatranscriptome | 180 | Y |
F036211 | Metagenome / Metatranscriptome | 170 | Y |
F037370 | Metagenome / Metatranscriptome | 168 | Y |
F045813 | Metagenome / Metatranscriptome | 152 | Y |
F047069 | Metagenome / Metatranscriptome | 150 | Y |
F048463 | Metagenome | 148 | Y |
F050600 | Metagenome / Metatranscriptome | 145 | Y |
F051509 | Metagenome / Metatranscriptome | 144 | Y |
F056029 | Metagenome | 138 | Y |
F056659 | Metagenome / Metatranscriptome | 137 | Y |
F059554 | Metagenome | 133 | Y |
F062881 | Metagenome / Metatranscriptome | 130 | Y |
F065641 | Metagenome / Metatranscriptome | 127 | Y |
F067235 | Metagenome / Metatranscriptome | 126 | Y |
F069642 | Metagenome / Metatranscriptome | 123 | Y |
F071270 | Metagenome / Metatranscriptome | 122 | Y |
F074459 | Metagenome / Metatranscriptome | 119 | Y |
F084079 | Metagenome / Metatranscriptome | 112 | Y |
F085674 | Metagenome / Metatranscriptome | 111 | Y |
F086281 | Metagenome | 111 | Y |
F088925 | Metagenome / Metatranscriptome | 109 | Y |
F097083 | Metagenome / Metatranscriptome | 104 | Y |
F104731 | Metagenome / Metatranscriptome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0209919_1003107 | All Organisms → cellular organisms → Bacteria | 7249 | Open in IMG/M |
Ga0209919_1008160 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 3777 | Open in IMG/M |
Ga0209919_1008748 | All Organisms → cellular organisms → Bacteria | 3594 | Open in IMG/M |
Ga0209919_1014798 | All Organisms → cellular organisms → Bacteria | 2547 | Open in IMG/M |
Ga0209919_1015145 | All Organisms → cellular organisms → Bacteria | 2504 | Open in IMG/M |
Ga0209919_1015495 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 2467 | Open in IMG/M |
Ga0209919_1016998 | All Organisms → cellular organisms → Bacteria | 2329 | Open in IMG/M |
Ga0209919_1017790 | All Organisms → cellular organisms → Bacteria | 2261 | Open in IMG/M |
Ga0209919_1023254 | Not Available | 1907 | Open in IMG/M |
Ga0209919_1024132 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1864 | Open in IMG/M |
Ga0209919_1024677 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 1841 | Open in IMG/M |
Ga0209919_1024760 | All Organisms → cellular organisms → Bacteria | 1836 | Open in IMG/M |
Ga0209919_1026260 | All Organisms → cellular organisms → Bacteria | 1775 | Open in IMG/M |
Ga0209919_1037391 | Not Available | 1443 | Open in IMG/M |
Ga0209919_1037743 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1436 | Open in IMG/M |
Ga0209919_1057414 | Not Available | 1130 | Open in IMG/M |
Ga0209919_1065820 | Not Available | 1047 | Open in IMG/M |
Ga0209919_1073297 | Not Available | 986 | Open in IMG/M |
Ga0209919_1076764 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 961 | Open in IMG/M |
Ga0209919_1082810 | Not Available | 921 | Open in IMG/M |
Ga0209919_1088257 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 888 | Open in IMG/M |
Ga0209919_1098778 | Not Available | 834 | Open in IMG/M |
Ga0209919_1104725 | All Organisms → cellular organisms → Bacteria | 807 | Open in IMG/M |
Ga0209919_1105506 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 803 | Open in IMG/M |
Ga0209919_1106390 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 799 | Open in IMG/M |
Ga0209919_1113709 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 770 | Open in IMG/M |
Ga0209919_1121152 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 742 | Open in IMG/M |
Ga0209919_1137181 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 691 | Open in IMG/M |
Ga0209919_1169576 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 611 | Open in IMG/M |
Ga0209919_1171353 | Not Available | 607 | Open in IMG/M |
Ga0209919_1175234 | Not Available | 599 | Open in IMG/M |
Ga0209919_1177187 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 595 | Open in IMG/M |
Ga0209919_1187501 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 575 | Open in IMG/M |
Ga0209919_1190496 | Not Available | 570 | Open in IMG/M |
Ga0209919_1206227 | Not Available | 543 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0209919_1003107 | Ga0209919_10031071 | F032367 | MSRKRDIKQFRQACKGAGLTAQERREASEALHAEKQGGHVQRDMSYGELLDWLRQWRG |
Ga0209919_1008160 | Ga0209919_10081602 | F021199 | VETLTETLTERVDRLIQARKVPLEWGSPHLSVTPKSVAIPQLAAEIAALEDAVREIALEVERLSGQG |
Ga0209919_1008748 | Ga0209919_10087484 | F015635 | MQASSRSSFQPAEAGAILAGAVGICAGGGALVGWAAGATRYGVLGGVVAGLPAGVFAVYRRFKGYFS |
Ga0209919_1009662 | Ga0209919_10096622 | F037370 | MWEVLRWFAVFVLALLLIVAGLFWLMGRPLPIPNF |
Ga0209919_1014798 | Ga0209919_10147982 | F071270 | MADAYSLAKQHLDAGIAEAAENNIDLNAYGQALVWKLLERYKEAGRTGADIVSEMQYTLDNLDDDGTFHVSRN |
Ga0209919_1015145 | Ga0209919_10151453 | F062881 | MNTSTTTAADLLAQIARIPLMERGKLSSYRPKHRPADAGPYHKLQTWERGKNHTRHVRSEQVPLLEEALAGYARFCALTEQYAQLVIEETRQQLAGVGEKKRPGPRPSSSRRRRRKSGD |
Ga0209919_1015495 | Ga0209919_10154953 | F085674 | MSVSNASEAGWPCDRLRRGPGESLLLTIALMAVAVAGFTAVTATLTPPGGAWHPAMRIRQRAIVSTAFNVMFESLAPSIAFLWIGDERATVVVASAGVAVYATGIVIWRGRQFMRAGGNRTPSAIVLFTLGPTATLLFWANALVVGSVAIYALALCIQLTVAVVSFYSLVSATQS |
Ga0209919_1016998 | Ga0209919_10169983 | F022919 | PSPAANPTPPRRGVPLTGPAQLGLGLAICIVALAAFFPQVVDASEASTRYHHLDHAGHFLLGIMAGLLLGSTPAISRRLGERPTLGLAAVLAAPVLMMLVMVPRFYEPLERHPFEHALYHLAMASCGLVAGLGATRLGLVAGRFAAFLAVGMALMFAAAMTGA |
Ga0209919_1017790 | Ga0209919_10177905 | F026738 | MGTTRAAPLAGVYQKVTLGATSKILGGGKYSISGMTRNTMETSEFGDDVDVFEFTNANGGTITLEDVTYDPTDPEQNTLRACLQNKTKLIYSETSGIRFWLDSTSYMTIGTSGSILIVQAGKVEADRSGIAKTSFQGQVSGAFMMIV |
Ga0209919_1023254 | Ga0209919_10232542 | F059554 | MRRYFAGITPVARPVGLLALGLSVITSALAAVPASPMASPVYDYAKPELLTGTLYAIGSHRQKVLYTFRRTARRTGAIVHIQRQFLGTNGTLAVVEKVLYESNRLVSDEMLDFQAGVSGAIRIEPDPENPARQRIFISYAHNLNPPKGRGRILQPDTVIDDTLYPFMMDHWEDLMQGKTVKFQFVSLDHERTYQFELVKTGESVQNHQPVVKITMQPTSFFIAMFVKPIIFTVQKNGAHHILSYIGRTTPRIRQGNSWKELNAETVFNYLKE |
Ga0209919_1024132 | Ga0209919_10241323 | F001784 | MGDVIRVEFGTEREWERTRAQWADGLSAIGALFGDDEQLMRAKAECVYQVLRQMVEDVPTVRILAHLPEDLPAEQVELLTGAIREAALKGIETSMTHSVRVVMAAVYDLCTSKLREHPS |
Ga0209919_1024677 | Ga0209919_10246773 | F005789 | ASPLNVLRSMRGSIVDARIAYPEVLHVEIKDSAGELWQLATQDAEWSPSDPTELVGRSVDDADIDAETGELRCKLSDGSVLDVKPAAREAEDDPPNWELITPGGVVLEFGPGVRWQIGSADSRAS |
Ga0209919_1024760 | Ga0209919_10247603 | F067235 | VETVTTRQEDGTVDIQERAPAAAIPDEQRLEELYGTGIRRATLGLARFSSDTIRLRGVEPAILRFGPSIDSRRTILGGIVARRPGGTIAWRAGSEHSSVAVEGFAPLLRGPLWRLETSFHDLVGRRFLARVTREAP |
Ga0209919_1026260 | Ga0209919_10262603 | F017250 | VSHPPLSTTPTAEKPALSEAQRAERLRLLARRLRSPEGLDRDALKHIERLTGDER |
Ga0209919_1037391 | Ga0209919_10373912 | F002422 | MQNMETLSLRATRVVAAPTARQGGGGSIEKTEQAKAGV |
Ga0209919_1037743 | Ga0209919_10377432 | F086281 | MAAPKPSVRSTTLSRQERRPQDLDEQHFGEIDVAMLYIEEARTRAERAAEALRRGGADEHLVEALEKAQDELSDVARRLRQGTLFAVPKEQLSL |
Ga0209919_1057414 | Ga0209919_10574141 | F029285 | MKNQADYSKYKCPFAHVEKDCGHELNGPEGYENCESVWCPCGFRGPVFYLDPGELKLELIDGSGGS |
Ga0209919_1065820 | Ga0209919_10658202 | F051509 | MYSTTTQHNGMAAVAVARAHYVGGVANDLMDAQGSWSIRCTVPATFHKPRPRRSQVTFS |
Ga0209919_1070263 | Ga0209919_10702631 | F045813 | MSNVLGLLAFVLYILIVVAAAAGVTMLVVKFSPAKKKPDAAPKS |
Ga0209919_1073297 | Ga0209919_10732972 | F047069 | MPRPPVERAGILAATGTGEPCSGAFAQDLNALWCPTCPKPTKNPGTGAVVQAQLWYRDPFSTSNQTTSLSDALEFTVAP |
Ga0209919_1076764 | Ga0209919_10767642 | F003875 | MAWRKTGLYRSAEEILIMTCDVCERDVGFEDGRRPQEHFRVSRHPNRGAIDDQEAPAIICSRECLRAFAADVTGPDRASSPQRSGGAVGKPDRGG |
Ga0209919_1082810 | Ga0209919_10828102 | F036211 | MVAQKSEAIRRAGWTLESDLDPVDEQLRRRRWRILRVALPQGHGLDPVPARITTPEQFVGWLVSRLSAQALMNYFEDLEEIAKQTCDLELLRLARKYLRR |
Ga0209919_1088257 | Ga0209919_10882572 | F104731 | MPRDLAARMPEPASLLNYLTRNLKTVMKLTLVDAFSRFGAKPASRLGSLSAMAADGAMVLNCLPAHFGHPARGVLRYETKLSTAQAGTKIVTTLGEDLTRARERDLPVRMVVSIQEREKTGNKGCRYHVRPDLVGKVVEFDGDRFVVDFTRFQPARPAVTASRRK |
Ga0209919_1098778 | Ga0209919_10987781 | F010008 | PVACVYQAYEDGALVATGRLMLDNLPQAGEELRLNGRVHVVREVAFSGGSYVLSLEPRA |
Ga0209919_1104725 | Ga0209919_11047252 | F056029 | MSVLMSWARSTLANVENAFDRSDRWFDRMLVGTLVLLAVAIVLLFVAT |
Ga0209919_1105506 | Ga0209919_11055062 | F030290 | RVKRSSDPRCHVGTRGHVTLFASYNGVRSDSVRFRFRGGCRAQDRLYHGAQVDNQVPPR |
Ga0209919_1106390 | Ga0209919_11063901 | F048463 | MPSLPLYPTDDGWPYPDALSLDPGASTVGGPVPDADDGVDLDLLELRADPHAYADLTELEYFAVSWRYGVGDGAAPHSMKELAAELGCTRAEARDVLGGALDKLRRRLLTE |
Ga0209919_1108734 | Ga0209919_11087341 | F084079 | TVYGYDGSGYTVGDRVELHPATDLGMRGVRYGTVTRLSLTPNDRVHVELDKRPGRTFAGSADTFRRVEG |
Ga0209919_1113709 | Ga0209919_11137092 | F088925 | VQERKCSKCGSVNVYKNTSNNWHQDGVVLQMLAVGSFHDLFQTEAFLCLDCRNLDIQVAETSTMYGKQKPLVDTIQASNNWVKA |
Ga0209919_1121152 | Ga0209919_11211521 | F022710 | MIELPAYLLALSFAAIGLAAWLLGRLTGAKRTVRLPRDYYVGLDHLINDRFDHAVEVFARMAETGDAAEIQFAL |
Ga0209919_1137181 | Ga0209919_11371811 | F032088 | VDPDREEQVALHRWAVIAEAAAQQWTPAERGALVRAAAAQSHSHP |
Ga0209919_1169576 | Ga0209919_11695761 | F065641 | DPQLQKCYESNLAEAGSFPGEERQVRALIATHEVFLMFEGAHSSRVHETIEHLLLPGLRPELRRWYQRTDAEKDLSAVVLRDHLSQLAGEKLESTTNTPDNNVEHGQSSRDI |
Ga0209919_1171353 | Ga0209919_11713531 | F097083 | YQAPPAPASMLYFIGAEHMYPLEVPAGSPMATFELQVAPDTYQLVAFPIGSENLTNRTAAAYTTGSGIGVLTVSAGQVVEGIHVQNINSDRCVNYTFPASPDGRFPAIEENCSKLISETAPATVRGTITYQAPPSPASMLYFISGEQWYVQQVPGGSPAANFELQVAPGTYQVVAFPVGSENLTNRPAAAYTIGSGIGVLTV |
Ga0209919_1175234 | Ga0209919_11752341 | F056659 | MNDETLQVFAGSAIDPEELLVLAEFAAPSHFVSDEHLRDAAENLADWTDHHPTTIHDARRLATRRDVRSSVVELLEEAAAVSGG |
Ga0209919_1177187 | Ga0209919_11771871 | F069642 | DETLLAGKKDLGALAERTNALAARIEELHRQIQGTQNQEASNQETQRTIQELNAELKANSTELGCLRVEREELARVPCLGEGPYASCPKIRRAVEAGPKISDLEDRVTTLSLKVEVQQSSLVQIAAPSSQLTRTLQGCERDRAKLEQERLRYQELSAIEARRDERLKTFDHLSQNRREIAEELARKESALSAFADLGA |
Ga0209919_1187501 | Ga0209919_11875012 | F050600 | MAILRPEEEARVRELFAELERPVELLVALGPEEMPLPGARDVDFGAEAVKIAEGLAELGELVTCRVEEEPDGFLRFPAIAIRPEGRDAGVRYDGLPWGYELGSLIGGVLEAGKRE |
Ga0209919_1190496 | Ga0209919_11904961 | F074459 | QDLNALWSTTPAKNPGAGAVVQAQLWYRDPLNTSNQTTSLSDAIEFAVGP |
Ga0209919_1206227 | Ga0209919_12062271 | F022996 | METIEKVNIAKIKADIKSMVEKQKFYKNQRKTERLVGKREISPSDATYKHFTNREDLRAMYAAYGLARGKSFSQVENKYPEENHPLNKYQGTIDRYLKKYTEKVKVEVEVQE |
Ga0209919_1230662 | Ga0209919_12306621 | F037370 | MWEVLRWMIVFIAALLLIVAGIYWVLGRPLPIPSF |
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