| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026164 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114514 | Gp0125922 | Ga0209924 |
| Sample Name | Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D1_MG (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 302277617 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 9 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| Not Available | 4 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Jiulongibacter → Jiulongibacter sediminis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → wetland area → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South San Francisco, USA | |||||||
| Coordinates | Lat. (o) | 37.4971 | Long. (o) | -122.133 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007787 | Metagenome | 345 | N |
| F032166 | Metagenome | 180 | Y |
| F035835 | Metagenome / Metatranscriptome | 171 | Y |
| F038111 | Metagenome | 166 | N |
| F050177 | Metagenome | 145 | N |
| F054750 | Metagenome | 139 | Y |
| F097996 | Metagenome | 104 | N |
| F100427 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209924_1052575 | All Organisms → cellular organisms → Bacteria | 1085 | Open in IMG/M |
| Ga0209924_1059119 | Not Available | 1003 | Open in IMG/M |
| Ga0209924_1071557 | Not Available | 879 | Open in IMG/M |
| Ga0209924_1080737 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 808 | Open in IMG/M |
| Ga0209924_1089900 | All Organisms → cellular organisms → Bacteria | 750 | Open in IMG/M |
| Ga0209924_1143700 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Jiulongibacter → Jiulongibacter sediminis | 541 | Open in IMG/M |
| Ga0209924_1147783 | Not Available | 531 | Open in IMG/M |
| Ga0209924_1155346 | Not Available | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209924_1037109 | Ga0209924_10371092 | F100427 | MTEVPLLVWIPLWALIATVGHELTHYIFWVPIATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAIYTFAGGKADYGRLTDAVTTRLA |
| Ga0209924_1052575 | Ga0209924_10525751 | F035835 | ELEEGLSPDEDRGSRHHHQDRKHRTTMKRKQADPVLGVTHGSLRTMLKSALRPIWRATSRKKFIESVRRHDINPKTGRQWFVVDCVDCGRVMGCSEKERRPLAKGGLSKKERSVFEVDHIDGITPLGDIKETLGPHVHDLLYGKQEIVCYKCHAKRTANQAKERHGK |
| Ga0209924_1059119 | Ga0209924_10591194 | F050177 | TPRQLYDRFEEVTNLTASELKAFRDSEYNQEYLEGNSDRAQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDEREWL |
| Ga0209924_1071557 | Ga0209924_10715571 | F032166 | LDDVIRLLSTEPAEWRDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDEQREWL |
| Ga0209924_1080737 | Ga0209924_10807372 | F007787 | MGKTKELAVMLNAESFEEMQFAQDFTKKEAKAKGQELAKTILDNGNANPLEVMATLSRLAEVINTFSETLKKDLNIPENETTLNGVHFKTRQGYPIYDYKQDGMINHYETLLKQRKDLIKQASKTGKPAVDPNNGEEIEGVPIKGYTKDSIVITF |
| Ga0209924_1089900 | Ga0209924_10899002 | F054750 | MEEIEKLNEYVNQYYKCDRTNGEELLMLQQKISGLLYYFETIRSEQHDAFESKVFELVQEGQSVARAVNEAHVTYPLMYKLRRIMDAGYRIVDAIRTNISYLKSEMNNIKR |
| Ga0209924_1143700 | Ga0209924_11437002 | F038111 | MIHRVPVVNRDNYTIWLENYKNIANFIHAEVYKYNKTTREEFGKDLDKLMDLHQNPLYVLVETDNKKLKKFMNIYGLTLDHKPLCDDGIEREVYRLDRRV |
| Ga0209924_1147783 | Ga0209924_11477831 | F097996 | MAIIKDGMHPRYLGFQCDWPVFVKIPFSADGKNWKKREHFNWAERDLERKDVASLYAQGLIYHNTELAKENKVGDRLSEMNTEELKSLVTQINAIVKGRTTSSQEYNNKRCKQSKIEDKQRGLIRRFLNRNPWVIEDFYRIRDHIIGD |
| Ga0209924_1155346 | Ga0209924_11553462 | F050177 | VDDVVNLSVEELEAFRASEYNEEYLEYNSERAQRGNEPLDDVIRLLDTPRDEWRDVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |