NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026096

3300026096: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3651_4511 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026096 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114292 | Gp0127555 | Ga0208184
Sample NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3651_4511 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45665423
Sequencing Scaffolds45
Novel Protein Genes51
Associated Families50

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM21-C3381
All Organisms → Viruses → Predicted Viral1
Not Available36
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C1981
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Atlantic ocean
CoordinatesLat. (o)3.5037Long. (o)-38.9985Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F000904Metagenome / Metatranscriptome843Y
F001383Metagenome / Metatranscriptome709Y
F001651Metagenome / Metatranscriptome657Y
F002030Metagenome601Y
F002187Metagenome / Metatranscriptome585Y
F003103Metagenome507Y
F003358Metagenome / Metatranscriptome492Y
F003761Metagenome / Metatranscriptome470Y
F003936Metagenome / Metatranscriptome461Y
F005011Metagenome / Metatranscriptome415Y
F009692Metagenome / Metatranscriptome314Y
F010477Metagenome / Metatranscriptome303Y
F013191Metagenome / Metatranscriptome273N
F013233Metagenome273Y
F013699Metagenome / Metatranscriptome269Y
F016015Metagenome / Metatranscriptome250Y
F017722Metagenome / Metatranscriptome239Y
F019388Metagenome / Metatranscriptome230N
F020789Metagenome222N
F026290Metagenome198Y
F026902Metagenome196Y
F028318Metagenome192N
F032041Metagenome181Y
F032440Metagenome180Y
F034708Metagenome174Y
F037815Metagenome167Y
F038275Metagenome / Metatranscriptome166N
F038425Metagenome166Y
F040146Metagenome162N
F043615Metagenome156Y
F044144Metagenome / Metatranscriptome155Y
F045153Metagenome / Metatranscriptome153N
F045159Metagenome153Y
F046009Metagenome152Y
F046632Metagenome / Metatranscriptome151Y
F047920Metagenome / Metatranscriptome149Y
F052875Metagenome142N
F053340Metagenome141Y
F058280Metagenome / Metatranscriptome135Y
F060978Metagenome132Y
F064816Metagenome / Metatranscriptome128N
F072515Metagenome121Y
F072734Metagenome121N
F074138Metagenome120N
F076258Metagenome118Y
F077170Metagenome / Metatranscriptome117Y
F077768Metagenome117Y
F077781Metagenome / Metatranscriptome117N
F105356Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208184_105764All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes1236Open in IMG/M
Ga0208184_106766All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM21-C3381060Open in IMG/M
Ga0208184_107113All Organisms → Viruses → Predicted Viral1005Open in IMG/M
Ga0208184_107187Not Available996Open in IMG/M
Ga0208184_107893All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote917Open in IMG/M
Ga0208184_108135Not Available892Open in IMG/M
Ga0208184_108260Not Available879Open in IMG/M
Ga0208184_108371Not Available867Open in IMG/M
Ga0208184_108494Not Available852Open in IMG/M
Ga0208184_108594All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes843Open in IMG/M
Ga0208184_108964Not Available806Open in IMG/M
Ga0208184_109197All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198784Open in IMG/M
Ga0208184_109217Not Available783Open in IMG/M
Ga0208184_109260Not Available780Open in IMG/M
Ga0208184_109322Not Available775Open in IMG/M
Ga0208184_109939All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium721Open in IMG/M
Ga0208184_110178Not Available702Open in IMG/M
Ga0208184_110363Not Available689Open in IMG/M
Ga0208184_110559Not Available676Open in IMG/M
Ga0208184_110653Not Available669Open in IMG/M
Ga0208184_110847Not Available655Open in IMG/M
Ga0208184_110863All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.654Open in IMG/M
Ga0208184_111497Not Available615Open in IMG/M
Ga0208184_111686Not Available606Open in IMG/M
Ga0208184_111770Not Available601Open in IMG/M
Ga0208184_111865Not Available596Open in IMG/M
Ga0208184_111880Not Available595Open in IMG/M
Ga0208184_111972Not Available591Open in IMG/M
Ga0208184_112152Not Available581Open in IMG/M
Ga0208184_112265Not Available576Open in IMG/M
Ga0208184_112364All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium572Open in IMG/M
Ga0208184_112382Not Available571Open in IMG/M
Ga0208184_112550Not Available563Open in IMG/M
Ga0208184_112596Not Available561Open in IMG/M
Ga0208184_112707Not Available555Open in IMG/M
Ga0208184_112747Not Available553Open in IMG/M
Ga0208184_112775Not Available551Open in IMG/M
Ga0208184_113056Not Available539Open in IMG/M
Ga0208184_113187Not Available534Open in IMG/M
Ga0208184_113327Not Available528Open in IMG/M
Ga0208184_113398Not Available526Open in IMG/M
Ga0208184_113443Not Available524Open in IMG/M
Ga0208184_113964Not Available505Open in IMG/M
Ga0208184_113990Not Available504Open in IMG/M
Ga0208184_114069Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208184_105237Ga0208184_1052371F077768KYSKPLRSIFTDYAKKRTLDPDEDSGEKALWDELVVNNFKIQKIHVSPEFSPDFAELEKGEGGERMYTFTNKDKDIEGFPFELYYEVGDMADYIARTVQKIKL
Ga0208184_105764Ga0208184_1057641F077781PARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT
Ga0208184_106766Ga0208184_1067662F043615MEEMMTEQAYGERTRWDHRYSEFEEGTLVRQKNGTWRITISRVCGGSNCGPRNGVAHQHRATNTMSEQEAVNLLLDWDHDLEEAKGLANYV
Ga0208184_106766Ga0208184_1067663F032041MYREEMMETKVTYTVEAINRPYGASQSIPWCDAVRSPGLTERKAIKTYNDINRWYHPQDDDGYSGHVRIVGSDDWTYTVEPPAPGERATLQAMYHLDDL
Ga0208184_107113Ga0208184_1071131F013191DFIYRKFIPNHLVCQDIDAQLELITNDLTKKYKCYFRGFDLIPSMHYDMLKQTTDKKYKIGENQPKTDNFIQFAHEGIMYFIWIDSADPTENIDWWSDNKFDEWVSDTVTLRLACQQNPSETFFYCVGFDYYHDQTKDGIFLGSSVTEFHDEKQDSWIGQHKHIEEEYPNSKFIFVGKDMDYGEFENLLNK
Ga0208184_107187Ga0208184_1071872F064816MAEQTTQRDFKTVDIIDYSMQSNPTKVNDAFDQIITSKVIDGLETKKREVSARMFSDKEEISNEEPEAERTETQXNY
Ga0208184_107893Ga0208184_1078932F047920DRFLEIRKKALQEQKINQYDFHELESLGKKHFKLTENLDIDHIDNSFIYKYISEVKEYLEWGEPESVKKYKKETPGQVVEGKIDKVIKWLAKKLDIAHSAAQKLVIKAREKGINPLTLQQKWAMLSPTLISLVAEYKPKKKKPQGD
Ga0208184_108135Ga0208184_1081351F045153QLRSIVKKKIEQEIKFKSGTSVPIDPESAKVILKTFDSLNSSNKKKMQDNMNKDTKSFLKILDFAFSNAK
Ga0208184_108260Ga0208184_1082602F003761LAAIVELNTTEIWSHEPCWYIGEFNQPAPDSQSVRRSQTITVIRNDKRVKLTRDLGDARLFGEEFQLICGAPDEKGGGEAMYTVGEALQMAQDMNNMPPPKTEVRPKDWNKIFWENIEERNLWKRGASTFGPMHRKQRNT
Ga0208184_108371Ga0208184_1083711F009692YYIDQQSITVDSTVNLLENAVVAVRHFGSFVTQINGEVQRNGITITDDTHNLLLSSTDLTGNTTAVFQLWISVRHSTATNDAYRTTHLFVRAEKNDASSCYLHRSGDAGNIGTDLQIVDTGSYSTYANVSDGNIGVGVTADANGWYVYLANRSSHSVVAGFKAIAITN
Ga0208184_108494Ga0208184_1084941F037815VGVAGFPGWVQGEADYIAFKRIKYPWLIVNRKQLWEMVETKLKERNYSPSIKPWYEKEAYATYDRSYFGKKDKFCWVPYEDIEALNDTIKL
Ga0208184_108494Ga0208184_1084942F000904MDDPKKIYEEFFEHAMHLLNNHQQSPELIAGTMIAIAQRIYKTQLNDEEYEEMMEVIKDAPVKPYNIKKERLH
Ga0208184_108594Ga0208184_1085941F017722LDTKELRSQAGALLDQAQVAMDQGEMDTFRRLVDEAQVTMTKADEIDAAASQVRKLRGEFNQPLNAIPVTSNDVAVYNAMDTTARIKNDYKPASYIKGLPAMAQPLWVQEQMGDNVKDEARFMTDTFTKWMRSPSDDIFWKTASPDEVKAMQEDTDAEGGFFVPEQFIN
Ga0208184_108964Ga0208184_1089641F028318MTKTIVTIAQMSDGKVNPKTELMEKPAWQLGFDDQSADILFRSKMLELLSRGYHKTVENFRRGDVVTNTGGQTSFWIVVFQDYEVRLQTNVEIMKIITDGHRNIERESTDENIAKEAVEEANFYAE
Ga0208184_109197Ga0208184_1091972F013233MTLFEKICRMVGDKRIPSFRMPAFRLFRVGFANKHVTTIVVMAIMVSAGAVSVGMYFAIRDVVGSTYNWPEPAEYAVTEAGLQTMGKKNEDYPDGTESQTLSIRLADGARISTLRIKDTDLGRTGIARALDISPLTNAVTGATAYLWVGNLTVTNSSFPTFKMETSDVANLVTGLLCDGHTMAATIKNTVSDISLESERLSSVYEVNGSIVDKIQIHITGNSGAF
Ga0208184_109217Ga0208184_1092171F046009MTTLKVIPEEKPDINKVKTCSLLDKSALSRNIFTKDECKRIIEIGRSWELVDAQIQTKSPEEESEKNDDYRNCKMLVAHTFY
Ga0208184_109260Ga0208184_1092602F020789MANNTNKHFTWYVKSRDKICTFLGADEFDGFVSRQWTDKNGNECYNFWDIDAQHPRTAVNCKWRNA
Ga0208184_109322Ga0208184_1093221F072734MSMMKFDGSKIKEIRKRKEQGLPSPPTGGDVVEQSKNAKGGSELVYQRVKERVPEDLWNYFQIILSRVREYK
Ga0208184_109322Ga0208184_1093223F019388MQTPNEQNPYLVETKNGKILKFNKIDADNEAANKQLDGDDVEVFHDGKLQYRLHGIEQGKLF
Ga0208184_109939Ga0208184_1099392F001651VALNNGKALAAENRRSQVLQMKMAGATETAIAEQVGISKTQVHNDIHRRLSEVRRDDKEAVQQEYNLQRSRYERLLLRWWSQATGPDDTQAAKATGIVLDILRRLDTIGGLIPEKPLIQLQQQNVMVGGVTFADLLREAMDGA
Ga0208184_110178Ga0208184_1101782F076258MEEYFGPVGTKPELFLKLVRRVTKPDADGGYTMHFMEDRNGRKAMFYNYKGKGFDEGECVLLKATIA
Ga0208184_110363Ga0208184_1103631F032440MANVYKNIQAIITSSASDDDMYTCPASTTAVVKTIKLYNTHSSNLVVDTKVYNAVDTTNY
Ga0208184_110559Ga0208184_1105593F058280MKTAIELDVFQEMKLEENTGEIVMRSMAEMMDTPLDFIDEEDEPEWIPLLKVLTEQFIDSYTVPASSEVPDEKDYHMM
Ga0208184_110653Ga0208184_1106531F053340MIGFLIFGLVVLSTVCLWLLIEERKSPKFLIWFIPVLLVIVTSTYVTYTSILGFPKVGI
Ga0208184_110847Ga0208184_1108471F002030MIGLLIFGLVILSTICLWILIEERKSWKFLVWFIPILLLIVTSTYVTYTSILGFPKVGIPEKGLYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYSREKHNALEGVKGQAAEGAFMVLGEDESLGPGDGEGDQKGGRSGEGYTIGGDISFYKWDFTDNMPPKNTQE
Ga0208184_110863Ga0208184_1108632F074138MDWNQLYIHPSDDTTEDDIRDFVEWVSRKAERLGFRVELKLHQKVESTSSETVSHNPLDKSNETY
Ga0208184_111497Ga0208184_1114972F044144DALKFAEEDLKRARTLAQSFFEKKATTKDMKEDLKSKFDKKDTSSYRYNDDDEKITAEDCEDQIRTWAKSRAEREIEKRPEGKQLANLKQIRISALDTIMESEAPTALIEILNKHMTKFIGISWHEQPRAIEHN
Ga0208184_111686Ga0208184_1116861F003358MAKISEVIAAIIGPDFDTMNVQALADNVGSVVQKLNTTYQQQLTD
Ga0208184_111770Ga0208184_1117701F002187DWEPKGAYWFNRLVKKLQSAQEDFNDTRQKLVKKYADEPDKDGNVKVAEVHIPAFSTAMGELMEEEFEIEGIKPIKFPEGLKLSPSEMGLMEEVVDMSAFLDDDDEDE
Ga0208184_111865Ga0208184_1118651F003103MKLYKIEASNCETFFGPFEEPIGRDARIIAQTPSNDAFLLLAEDTFDELELLDSVPTGFDFTYCQEWGLTIDDDVVDRVITDLGKKANPWKAPHPSYCLI
Ga0208184_111880Ga0208184_1118802F060978MGDMKRKTKKMDHGTIEFGVDCITITIDSEPWKVGRIHSVNKAGAGKHKDRRTKRNRTRASQNSNAVRESM
Ga0208184_111972Ga0208184_1119722F000615MCRLRTFYECSDGTMGFAEMVLSYDDDIKAHIKHLSQGVRMVITEHIDLV
Ga0208184_111972Ga0208184_1119723F026902GYRIEYAEKGIPGTLCKYVTGTEKLLSVLLELKYFDKLKSFDNVKITGVEKK
Ga0208184_112152Ga0208184_1121521F026290REAKDISEDVPIKDKANGLLTRDIHFSLEQADLAKNLLQAVNQSRDVHIDAQSKWEAFLIGIGMCSGDEIVGGDLDSDDPNKRCLTIKTSNGVAGA
Ga0208184_112265Ga0208184_1122651F077170LSVVSQDTAQWMAKKQGKVKRFLGGNIAELNLEVPAGAEKVTLYDQTDGSELVVPSHAAENYRTKPYSVSELINGTLVIRADPTRRHFDWTPPPEIESSVGSAAETVSKISGKKRKRGKRGRR
Ga0208184_112364Ga0208184_1123642F040146MTKGLDTMDINKKGQPRATRVKMKYGGGVGVQTHGNKLAKALNTKRPDQSLFQNEDGYLTGGIPIRS
Ga0208184_112382Ga0208184_1123822F038425MDGEKSRVHCPKCDKRMWWWGYSSSYTGDGSTELGLGCENPKCDGYEVLPEDVYDAIVTEEERIDV
Ga0208184_112550Ga0208184_1125502F013699VGSIKDMSDYKAGYKTEVARWQIVPRERTEYEEYLKTHDLIDLKGRIVRGEPNPIDPTYGGIGYTYYMPETRDLGRVKVSLVERWNWKFEWEDVNIG
Ga0208184_112596Ga0208184_1125961F046632VHAVLEMDADVLLSASGDVMSHLDRTGRRWTSISDLKETSRWTKFSAVEKDLEKMFDPLVKKYLKKGEFQENATVWELWRMAKRKVDGKTMSLIIKDYMDGMEKVIKKNIDTFSSAMLSYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPIPIAQTDDQIEMSEKQQELIEFTESKGWSTKMWDAAI
Ga0208184_112707Ga0208184_1127072F016015MLDVNNFENRIVKFKRIDSEGNISDKEAEVRRMDYDQAEDIPRSVTARLVDPLNFVITLGYDKSKKKFSGPLGTDIWESNFDIDDFIESSKMGTADRYMKSPKRNRARF
Ga0208184_112747Ga0208184_1127471F052875MELAAVQQLVAAVGPIGAMVVIGAWWFATHQEKRNGAKDQTARLKARDAIIQISADVAHMKKDIADIKADGKTTATTLMQHVTQQHTR
Ga0208184_112775Ga0208184_1127751F005011MKETNRKKETMQETITKYQSKFDGLMRSIEKDKSLKKMPGNATAGIAVQMIKSLKSYLKANRA
Ga0208184_113056Ga0208184_1130561F045159MAEFQALQTATAEWKPHQIAKAGDIASMAEAAGDLANVVKETLSLASAGMEVVKLLAQLQSINPLLIALDALADEVLIAIQNIKEAGFWYLYVDPYFIRNVAASPAFTYGFEQLRNPAGDRLWLAK
Ga0208184_113056Ga0208184_1130562F038275EAEIRRDDIKDLMEKTKKLATMYSELLKIKREGWENVLRAQVKKDAKEKEKQNG
Ga0208184_113187Ga0208184_1131872F001383QFTLEVSHASPAQLATIALDLKIMSNGWEKHGPRIVINGRQVQAPSLRIPGSGHKHGPRNGKPQATSHKLATFT
Ga0208184_113327Ga0208184_1133272F010477MKIQLQIRYVVFVPYLIFIGMMGGNVLMEAIVIGVVLAMYDFLIDGGDGGRPA
Ga0208184_113398Ga0208184_1133981F003358MAKISEVIAAIIGPEFDAMNIQALADNVGSIVQKLNSTYQQQLTDEYEIFSLFVN
Ga0208184_113443Ga0208184_1134432F034708MNKLKLKSGREIGIKDISLDERDEMLDSVEYIYDGKGVVSGVKMMHSTITKWLRFGLNGKADDAYILGLSFEERTEIFLAMQEKLLTGEGNASSSK
Ga0208184_113964Ga0208184_1139642F072515EELKGKNCSSKQLLFARYVASGMGAIDAYKLAYPKAQSEGYVKKRIDKLLKTEKIQKMVKEEIREILDDEGVTNNWLIERYKTIADLAESDTAKLRSLDSLAKISGLFDTDEKKSEQVTVWAGFQPEQLEGVGKHGKKPELIAHAEREE
Ga0208184_113990Ga0208184_1139901F003936ILYFANDFVMIEIFEIFWSTKIELRVVILATLLVGCFWYWQENKRKQKERHQERLNSIKIKPNSIS
Ga0208184_114069Ga0208184_1140691F105356SHAEHQELSMVLGVWLPGERYRIYEPGNGREITVHIPGADTIYDVDELNEICHWQREEAEKEWQSQEPKKPLTRAQQHDLGGTLVEIRASKEFTKENLHGRYW

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