| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025693 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118071 | Gp0127833 | Ga0209826 |
| Sample Name | Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15C Gulf of Mexico (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 508918847 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine cold seep biome → mesocosm → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 27.37 | Long. (o) | -90.57 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009040 | Metagenome / Metatranscriptome | 324 | Y |
| F013095 | Metagenome | 274 | Y |
| F013190 | Metagenome / Metatranscriptome | 273 | Y |
| F078841 | Metagenome / Metatranscriptome | 116 | N |
| F087322 | Metagenome | 110 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209826_1037697 | Not Available | 2115 | Open in IMG/M |
| Ga0209826_1163600 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon | 710 | Open in IMG/M |
| Ga0209826_1198483 | All Organisms → cellular organisms → Archaea | 607 | Open in IMG/M |
| Ga0209826_1234550 | Not Available | 527 | Open in IMG/M |
| Ga0209826_1247589 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209826_1037697 | Ga0209826_10376972 | F013095 | MNKMTPIMPIKLPMNSTVSLTSPTRGAQKTAIKKPVTIIGIPIPTVICFDAMLSITAKIVYEVYDET |
| Ga0209826_1163600 | Ga0209826_11636003 | F013190 | SMRTPNFMSLSQLYFSNAELGQEMSISATWDGSIPLNETPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK |
| Ga0209826_1198483 | Ga0209826_11984831 | F078841 | RATELKKEVCDERGICSEKIFYRCLSELVKSKRIIKNERSRGNVSYYKPDWGVYENMINIDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFDNIMGMYASMTLITQQPGKAKTSAIITSTLKNTIPELLEMFSIALEKCGKNRSRILSSLMDYRDGNMGGGWVLENHPDFKK |
| Ga0209826_1234550 | Ga0209826_12345502 | F087322 | SVCLHALRFGFVLTVLLVLRIIHAGTGDVCFIFLSRRIFLPECLRAAIESQARKALFKLN |
| Ga0209826_1247589 | Ga0209826_12475891 | F009040 | AAVVKSDGGERCRNVGAMTPSGKVKRGERKRTTAEVSKAD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |