Sample 3300025561

Overview

Basic Information
IMG/M Taxon OID	3300025561 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101328 \| Ga0210119
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordC_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	194470203
Sequencing Scaffolds	40
Novel Protein Genes	44
Associated Families	38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1
Not Available	12
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfocapsaceae → Desulfofustis → Desulfofustis glycolicus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.003361	Long. (^o)	-122.468277	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005815	Metagenome / Metatranscriptome	389	Y
F012874	Metagenome / Metatranscriptome	276	Y
F016165	Metagenome / Metatranscriptome	249	Y
F017852	Metagenome / Metatranscriptome	238	Y
F018371	Metagenome / Metatranscriptome	235	Y
F018541	Metagenome / Metatranscriptome	234	Y
F021303	Metagenome / Metatranscriptome	219	Y
F021566	Metagenome / Metatranscriptome	218	Y
F024001	Metagenome / Metatranscriptome	208	Y
F036103	Metagenome / Metatranscriptome	170	Y
F042358	Metagenome / Metatranscriptome	158	Y
F042907	Metagenome / Metatranscriptome	157	Y
F047065	Metagenome / Metatranscriptome	150	Y
F052283	Metagenome / Metatranscriptome	143	Y
F058158	Metagenome / Metatranscriptome	135	Y
F058721	Metagenome / Metatranscriptome	134	Y
F068280	Metagenome / Metatranscriptome	125	Y
F069741	Metagenome / Metatranscriptome	123	Y
F070125	Metagenome / Metatranscriptome	123	N
F072360	Metagenome / Metatranscriptome	121	Y
F073570	Metagenome	120	Y
F073717	Metagenome	120	Y
F074892	Metagenome / Metatranscriptome	119	Y
F076890	Metagenome / Metatranscriptome	117	N
F080659	Metagenome	115	Y
F084253	Metagenome	112	Y
F085223	Metagenome / Metatranscriptome	111	Y
F085722	Metagenome	111	Y
F087210	Metagenome / Metatranscriptome	110	Y
F088283	Metagenome / Metatranscriptome	109	Y
F088437	Metagenome	109	Y
F093176	Metagenome / Metatranscriptome	106	Y
F097364	Metagenome	104	Y
F099323	Metagenome / Metatranscriptome	103	N
F103272	Metagenome	101	Y
F104423	Metagenome	100	Y
F104424	Metagenome	100	Y
F105203	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F005815

Metagenome / Metatranscriptome

389

F012874

Metagenome / Metatranscriptome

276

F016165

Metagenome / Metatranscriptome

249

F017852

Metagenome / Metatranscriptome

238

F018371

Metagenome / Metatranscriptome

235

F018541

Metagenome / Metatranscriptome

234

F021303

Metagenome / Metatranscriptome

219

F021566

Metagenome / Metatranscriptome

218

F024001

Metagenome / Metatranscriptome

208

F036103

Metagenome / Metatranscriptome

170

F042358

Metagenome / Metatranscriptome

158

F042907

Metagenome / Metatranscriptome

157

F047065

Metagenome / Metatranscriptome

150

F052283

Metagenome / Metatranscriptome

143

F058158

Metagenome / Metatranscriptome

135

F058721

Metagenome / Metatranscriptome

134

F068280

Metagenome / Metatranscriptome

125

F069741

Metagenome / Metatranscriptome

123

F070125

Metagenome / Metatranscriptome

123

F072360

Metagenome / Metatranscriptome

121

F073570

Metagenome

120

F073717

Metagenome

120

F074892

Metagenome / Metatranscriptome

119

F076890

Metagenome / Metatranscriptome

117

F080659

Metagenome

115

F084253

Metagenome

112

F085223

Metagenome / Metatranscriptome

111

F085722

Metagenome

111

F087210

Metagenome / Metatranscriptome

110

F088283

Metagenome / Metatranscriptome

109

F088437

Metagenome

109

F093176

Metagenome / Metatranscriptome

106

F097364

Metagenome

104

F099323

Metagenome / Metatranscriptome

103

F103272

Metagenome

101

F104423

Metagenome

100

F104424

Metagenome

100

F105203

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210119_1001115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	5154	Open in IMG/M
Ga0210119_1001300	All Organisms → cellular organisms → Bacteria	4698	Open in IMG/M
Ga0210119_1002103	All Organisms → cellular organisms → Bacteria	3642	Open in IMG/M
Ga0210119_1003110	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2982	Open in IMG/M
Ga0210119_1007195	All Organisms → cellular organisms → Bacteria → Proteobacteria	1978	Open in IMG/M
Ga0210119_1008239	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1861	Open in IMG/M
Ga0210119_1009445	All Organisms → cellular organisms → Bacteria → Proteobacteria	1743	Open in IMG/M
Ga0210119_1011941	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1567	Open in IMG/M
Ga0210119_1013916	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
Ga0210119_1015021	Not Available	1407	Open in IMG/M
Ga0210119_1016638	Not Available	1342	Open in IMG/M
Ga0210119_1022995	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1151	Open in IMG/M
Ga0210119_1026866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1070	Open in IMG/M
Ga0210119_1030182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1013	Open in IMG/M
Ga0210119_1031418	Not Available	995	Open in IMG/M
Ga0210119_1032026	Not Available	986	Open in IMG/M
Ga0210119_1032518	Not Available	979	Open in IMG/M
Ga0210119_1039208	Not Available	895	Open in IMG/M
Ga0210119_1039623	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
Ga0210119_1044830	Not Available	838	Open in IMG/M
Ga0210119_1046181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	826	Open in IMG/M
Ga0210119_1046661	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
Ga0210119_1052409	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfocapsaceae → Desulfofustis → Desulfofustis glycolicus	776	Open in IMG/M
Ga0210119_1055983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	752	Open in IMG/M
Ga0210119_1057626	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	741	Open in IMG/M
Ga0210119_1058776	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	735	Open in IMG/M
Ga0210119_1061701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	717	Open in IMG/M
Ga0210119_1061954	Not Available	716	Open in IMG/M
Ga0210119_1063513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	707	Open in IMG/M
Ga0210119_1065416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	697	Open in IMG/M
Ga0210119_1067555	Not Available	686	Open in IMG/M
Ga0210119_1076689	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	644	Open in IMG/M
Ga0210119_1077390	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.	641	Open in IMG/M
Ga0210119_1077543	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	641	Open in IMG/M
Ga0210119_1085768	Not Available	609	Open in IMG/M
Ga0210119_1087495	Not Available	603	Open in IMG/M
Ga0210119_1093544	Not Available	583	Open in IMG/M
Ga0210119_1098064	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon	569	Open in IMG/M
Ga0210119_1113634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	527	Open in IMG/M
Ga0210119_1121014	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	509	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0210119_1001115

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales

5154

Open in IMG/M

Ga0210119_1001300

All Organisms → cellular organisms → Bacteria

4698

Open in IMG/M

Ga0210119_1002103

All Organisms → cellular organisms → Bacteria

3642

Open in IMG/M

Ga0210119_1003110

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

2982

Open in IMG/M

Ga0210119_1007195

All Organisms → cellular organisms → Bacteria → Proteobacteria

1978

Open in IMG/M

Ga0210119_1008239

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales

1861

Open in IMG/M

Ga0210119_1009445

All Organisms → cellular organisms → Bacteria → Proteobacteria

1743

Open in IMG/M

Ga0210119_1011941

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

1567

Open in IMG/M

Ga0210119_1013916

All Organisms → cellular organisms → Bacteria

1456

Open in IMG/M

Ga0210119_1015021

Not Available

1407

Open in IMG/M

Ga0210119_1016638

Not Available

1342

Open in IMG/M

Ga0210119_1022995

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota

1151

Open in IMG/M

Ga0210119_1026866

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

1070

Open in IMG/M

Ga0210119_1030182

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales

1013

Open in IMG/M

Ga0210119_1031418

Not Available

995

Open in IMG/M

Ga0210119_1032026

Not Available

986

Open in IMG/M

Ga0210119_1032518

Not Available

979

Open in IMG/M

Ga0210119_1039208

Not Available

895

Open in IMG/M

Ga0210119_1039623

All Organisms → cellular organisms → Bacteria

890

Open in IMG/M

Ga0210119_1044830

Not Available

838

Open in IMG/M

Ga0210119_1046181

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium

826

Open in IMG/M

Ga0210119_1046661

All Organisms → cellular organisms → Bacteria → Proteobacteria

821

Open in IMG/M

Ga0210119_1052409

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfocapsaceae → Desulfofustis → Desulfofustis glycolicus

776

Open in IMG/M

Ga0210119_1055983

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans

752

Open in IMG/M

Ga0210119_1057626

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

741

Open in IMG/M

Ga0210119_1058776

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

735

Open in IMG/M

Ga0210119_1061701

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

717

Open in IMG/M

Ga0210119_1061954

Not Available

716

Open in IMG/M

Ga0210119_1063513

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

707

Open in IMG/M

Ga0210119_1065416

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

697

Open in IMG/M

Ga0210119_1067555

Not Available

686

Open in IMG/M

Ga0210119_1076689

All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon

644

Open in IMG/M

Ga0210119_1077390

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.

641

Open in IMG/M

Ga0210119_1077543

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium

641

Open in IMG/M

Ga0210119_1085768

Not Available

609

Open in IMG/M

Ga0210119_1087495

Not Available

603

Open in IMG/M

Ga0210119_1093544

Not Available

583

Open in IMG/M

Ga0210119_1098064

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon

569

Open in IMG/M

Ga0210119_1113634

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

527

Open in IMG/M

Ga0210119_1121014

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

509

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0210119_1001115	Ga0210119_10011155	F021303	MEEQPLSADVRDWRANVLDHAFEFVELVYREAPVEYQRLVASGRFRPELERGATFNHGKLYAYAEFTVFRREFLNRFPDASPAACINAFSSLFLKNDISIHNLVEFIEGPDDSGQLRLNSPG
Ga0210119_1001300	Ga0210119_10013002	F047065	MTDLLNKFSKAAKVVSSSKTRMWECVYGAYVDHLSDISTDSLPEEIQIFYDSIKLRITSVEAFGHIDNDEACYIANDIMYMADVISSGLRKP
Ga0210119_1002103	Ga0210119_10021032	F021303	MSQAESSGALVSVQADVLHHAAEFVELVYRQAPLEYQRLLASDRFRPDLERGGTFNHGKLYAYAEFSVFRREFLDRFPEASAAACINAFSGLFLKNDISIHNLVEFVEGADDAGQLRLNTPGP
Ga0210119_1003110	Ga0210119_10031101	F084253	AAQGFAVRRTSVRRSRKPAENAEQDKKGHLWMETS
Ga0210119_1003377	Ga0210119_10033775	F076890	MIGTRSVAAMLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLRTTPAAHPMPMGLDESRCARVDWSTYTLAVDPEEWNAFWQDDRNSPFEIGIAFVEDFHPLPLSAFGAAILDTGSADYLVSCGCFW
Ga0210119_1007195	Ga0210119_10071953	F070125	VTSAEDRRRWTEALHAYRDDSERLFALVASLANLLDRTLVVETMESVLGVTAVHDGDCVIFDDFAIRFGSDDRVKSVFRTIDGSVKGD
Ga0210119_1008239	Ga0210119_10082391	F073570	MNEPINQIVGILNTTFHQMYQNRVPVGSLIDPQVDNKKTSHKYTIENDLIIYEKYDHHGKLISKVPWSQKTIA
Ga0210119_1009445	Ga0210119_10094451	F073717	KKVEKVLPPKKALRYAQIETRVDNMLRRDVYGLIPLAR
Ga0210119_1011941	Ga0210119_10119413	F012874	MPVKAGIQNYLKTLDSRLRGNDAKGVFKTFYDTINLKSSIIMGAPDG
Ga0210119_1013916	Ga0210119_10139161	F070125	VTTAEERRQWIEALQAYRDDSERLFALVASLANLLDEEMVVETMESVLGVVAVHDGDCVVFDDLAIRFGSDDRVKSVFRII
Ga0210119_1015021	Ga0210119_10150212	F016165	ARMLLKILSGVLGVAGLCWLALLFSSRAILVSERVEAAALHQQLVCTYFTGSGTMRKEYWYSKSDRFGRAACPRWESVREPE
Ga0210119_1015255	Ga0210119_10152553	F087210	MRFLIAVLALAGAGTALAHTPDTGFLGNFGHQLTSLHHSPAAILLGVLVVALMLVAFRNRTAR
Ga0210119_1016638	Ga0210119_10166381	F012874	AKAGIQNYLKTLDSRLRGNDVKGRFKTFYETINIDYATLYRF
Ga0210119_1019749	Ga0210119_10197492	F099323	VNKILGFWHKFKAFFGHRLILELAILGSFIAYTINPGSLGELMRICGTIFLFNMLIGNYRIGDVTEGHLVVLGIFLITLLINGFMPDEMIHRRSFRYFLAFPGMILAIHCLSKGINPDSRTLLVYSSIAVLAVIFQFITYYTVERVVNAGGLESYGVYSNRHHFGSVASLILPVIVYFATQNKGWLRILCGAAVIVAFFLLWESSSRISWLSFFSSVSVAAFVFLRNKKLLLTL
Ga0210119_1021428	Ga0210119_10214282	F076890	MTGTRSTITTLIAMLVLGVASCSTLDVDDYCRYSEAQSIRKADPGSLALVLGVKPGRTRVSPFVVFRSLSENTPEASITLSGTAAPHTMPMNLDESRCAGVDWGTYTLTVDREAWNAFWLDDRTSHFEVAIAFLDNSEPLMVSAFGAAIVDTAASDYLVACGCYWK
Ga0210119_1022995	Ga0210119_10229952	F036103	LKKLSYIILAIGIATCLIGAYLMAFGEPIIGADHAGIATVVGITGIGMISTGNMLSFARKKKEDQ
Ga0210119_1026866	Ga0210119_10268661	F088437	RYETDAVEKLMTLLFITEDSYRMAGVSQALGLDTQQAGTWLALEGENSRAIQPMALWGLVQWLGQLSPAQLNLALGVDPPHHIIEDEKHTKECDQKAYIPMVYAPKEALIWWIDYIHSVSEVELTASLERFKTISDRLKDITGATVDGWEAAQNALQAAFEGIILAECHFHAMLKLGQHLATYKRQRKKAGRPVSEAEEADIQRAFWNVLKAATPEEYQEALDELPHVFDQEPLASRKQSLVAKQTLFQAWTTDHRLALVTTALDQCMKFLTRKCENMQTFHGKESGVATVNAWAITRNCWRFLKGAKRAGLSPLELAGADFLGIPWMQLVNLLLSIWSSLPFSAQTLQLST
Ga0210119_1030182	Ga0210119_10301821	F088283	MKTQVLLFVPFLAACASCATDADVAGMYAPSCVAFEGSTIELTDQRFTWDKFTDEVTVDAAGGEVDPFPGFPVRGTYTIEGDELRLRTDVGELAAVLHLVRRPGQVYLLTAEEFEAWEKGGAVPNCALL
Ga0210119_1031418	Ga0210119_10314182	F103272	MTDREKELIKYKKQYLNLVNQITRLQLSGKNPPEKLLKQTQEIGRVAEIPETFLKSILP
Ga0210119_1032026	Ga0210119_10320261	F097364	MSIWSSIFGPKLGEVASVEIRPSGLLMDADGWYYEESLDAECSLRTIRVQQDRPGEWYVRNSNCQIAELNSPSRASEVLSFFTGSFRWLRFEREAENGHGPGAIKIIGTFLDGEGAERESHLGYVEAAAAKSLVQQDVRRLWGRIRCLRPPGLGRRPNFCLRFDLLTELDGEMFDDDVKVEARSGNLLPLSP
Ga0210119_1032518	Ga0210119_10325182	F052283	MNTQQKSVIVGAILGATMGALGGYLFTRGLDMPREEEEGFSLSSLPPGAIVSLIISVMAVLRGIAELGEQV
Ga0210119_1039208	Ga0210119_10392082	F072360	MLRSGMNLKPNILKSFSRRTLWIFFILFVSVSFSTSGVIANSCKGGADCLNCAAAAHPHLPGMDVEMVNQGCQSTEQNRSCGFEAGHSADDFDRIATIVTSGTHSYSGIFSIASDESDQAHLHLEFLTQFQYPDRGELTPIFLLNQSLLC
Ga0210119_1039623	Ga0210119_10396231	F012874	VMPAKAGIQNYLKTLDSRLRGSDAKGCFKTFYETINLER
Ga0210119_1044830	Ga0210119_10448301	F104424	LIEEENNFLEFLNYQIIQKNKFEHVARKIPLFKSMIQERHKTIVKMIDKFEDVRRREVYSMLVDEFKKISKRI
Ga0210119_1046181	Ga0210119_10461811	F080659	MTGIPILDTILDLIMQYRLGIAMMGLAVIAIGLLARPIAPEWSAHNRSALAMMVIGGIVLILLPTLAAAIVGG
Ga0210119_1046661	Ga0210119_10466611	F074892	MMPKYALIALLGLLLSACSERGENIYRTRVGPDRSNMAIVTLRLAEDVRDVTIRESVLPRSEYGTILLVPGQYTLYEHDGANIGVNIRPMLVNVEKARANGELILGHTYVLRAGKSKETGERALWIEDARSDEVFVDRR
Ga0210119_1052409	Ga0210119_10524091	F012874	MPAKAGIQNYLKTLDSRLRRNDAKGRFKTFYETINLQYSFPFFPV
Ga0210119_1055983	Ga0210119_10559831	F068280	MNRSFASWITANPGAAVFLTGLLGLLPLFGLGFAF
Ga0210119_1057626	Ga0210119_10576262	F024001	MLNCTNPKGSRKNKFTFLSVEAPAWQGAKAPEYQDISSFRNAAR
Ga0210119_1058776	Ga0210119_10587762	F058158	MRKSYMSDFTKTEKDDIDIWELHVKEREYILAQIANDRRTSRIRNWIELIFMLGFIYYILYDIYKDGDLDTIIKFLKT
Ga0210119_1061701	Ga0210119_10617012	F018541	MYSPKMRSFWVDFPLTDEQYAKLDLRWRRRQNFYEVKNEPLPKVRISSFCTFGGEDYKILSLEARGDIDAYHEALKVMEQWIVEN
Ga0210119_1061954	Ga0210119_10619542	F042907	MTDKMRVEAEDKLFNDLRDEPCIVCGDPYLHVLGSYTPEEPKGSKNREDRAPVLYYTLCRTCFNNGRIPTARIESAYKIKFGKKAA
Ga0210119_1063513	Ga0210119_10635131	F105203	MQQAKHAEQMVNRFRELVEESGDSLSVNHYNELKLIIEAGLDTALLENMSRISERLTVLAHDIQHNADFFE
Ga0210119_1065416	Ga0210119_10654161	F085223	MESINQSEQKRQNRTVTLHLGNTLAEYKAMILTEGGIQTLIRRVEIADSLNWGPLANGHHPGCPRLLHFTHHDSYVRGAKHFDGRQSEITLFRVRCLDCEAVFTIQPSFIVRYKRYDTDALEKFMVLLFITEDSYRMAGISQALGMDTQQAGTWAALEEATGDTISPTALWTLVQWLGQLSPAQLNLALGVDPPSH
Ga0210119_1067555	Ga0210119_10675551	F021566	MFTCKNVDSFTARVLSGLVVSVTIVFGSLTYAVSHMQAFA
Ga0210119_1076689	Ga0210119_10766891	F017852	MNNEKMKRMTLELPDKLGGLEKKHGLKRVGVWTVIPEHLLVWVYEAPSSEALQNFSMEPEMIKWMAWNTSEIKLAMSLEESIKLLE
Ga0210119_1077390	Ga0210119_10773901	F042358	LKNEEQFSIYMALDGPHLDGLIGSAGIMRFDWPEREFYIQHYEGISAAHNVSLAPNGKLALLGNFSQQIVLLDVSNPQAMKLMARQATQYFEECPYRLRANTHHLWYPDNERFIGAIGDNLYRFHVDNLKEPEQLGPHYLFNAHEIRWDPDRRFILVGDLGPEDTDARQIAV
Ga0210119_1077543	Ga0210119_10775431	F104423	VEVHRIRKSKALYDKKRSHIFLEVEKNRWLEIETLVGVTYESIQTFLECEKKTGIRIVGFTEQNFQWGTIKDWSHSGIIKDLKSKKK
Ga0210119_1085768	Ga0210119_10857681	F085722	MARKAIVGIFVVLMAMVQTGCSNPQKEAARASTEASEAEKDVSEQKAKILEDYRKCLNKNKSDEEACAGYKKALDS
Ga0210119_1087495	Ga0210119_10874952	F018371	MDYSNIIQPKRLTNMQEMEVHVNGPDGANRLFMYSGMAEVELCGGLPHPRWSLEVVCFDIGRRYDIENEAVIKILANAALAGGRTDGVASFAGWQIFGAAGELDHEDCRVRMNIAAGARDTQAFLEQIS
Ga0210119_1093544	Ga0210119_10935442	F093176	MTMVRRILLVFVICALAVAYLYQASYSVKLTRRLSRLEVERQLLAERLEGVGAEIVILSGFARMESLWVAQGRPAAPTDRTVVADGQVVAMAKHPGADAAAR
Ga0210119_1098064	Ga0210119_10980641	F069741	MENVFFDVDQFSRLDKIEQARRLEEAERRIDEVQRAAADDPDSLSWVDQQRQYLVDMQHLIF
Ga0210119_1113634	Ga0210119_11136341	F005815	MTMNTTRLTMYWTTGEAATVIDFIDTLRDALWETYGEQITRMHREDHDDRIRDSNQCEFEFNDEIPF
Ga0210119_1121014	Ga0210119_11210141	F058721	MTMLRATLPCADPKCKEKMRLVFQNERFIGYRCLLKPNTHNFRYDRAHKRWEKIIINTKPIIGYKESPHDIRFEEELVVESI

Scaffold ID

Protein ID

Family

Sequence

Ga0210119_1001115

Ga0210119_10011155

F021303

MEEQPLSADVRDWRANVLDHAFEFVELVYREAPVEYQRLVASGRFRPELERGATFNHGKLYAYAEFTVFRREFLNRFPDASPAACINAFSSLFLKNDISIHNLVEFIEGPDDSGQLRLNSPG

Ga0210119_1001300

Ga0210119_10013002

F047065

MTDLLNKFSKAAKVVSSSKTRMWECVYGAYVDHLSDISTDSLPEEIQIFYDSIKLRITSVEAFGHIDNDEACYIANDIMYMADVISSGLRKP

Ga0210119_1002103

Ga0210119_10021032

F021303

MSQAESSGALVSVQADVLHHAAEFVELVYRQAPLEYQRLLASDRFRPDLERGGTFNHGKLYAYAEFSVFRREFLDRFPEASAAACINAFSGLFLKNDISIHNLVEFVEGADDAGQLRLNTPGP

Ga0210119_1003110

Ga0210119_10031101

F084253

AAQGFAVRRTSVRRSRKPAENAEQDKKGHLWMETS

Ga0210119_1003377

Ga0210119_10033775

F076890

MIGTRSVAAMLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLRTTPAAHPMPMGLDESRCARVDWSTYTLAVDPEEWNAFWQDDRNSPFEIGIAFVEDFHPLPLSAFGAAILDTGSADYLVSCGCFW

Ga0210119_1007195

Ga0210119_10071953

F070125

VTSAEDRRRWTEALHAYRDDSERLFALVASLANLLDRTLVVETMESVLGVTAVHDGDCVIFDDFAIRFGSDDRVKSVFRTIDGSVKGD

Ga0210119_1008239

Ga0210119_10082391

F073570

MNEPINQIVGILNTTFHQMYQNRVPVGSLIDPQVDNKKTSHKYTIENDLIIYEKYDHHGKLISKVPWSQKTIA

Ga0210119_1009445

Ga0210119_10094451

F073717

KKVEKVLPPKKALRYAQIETRVDNMLRRDVYGLIPLAR

Ga0210119_1011941

Ga0210119_10119413

F012874

MPVKAGIQNYLKTLDSRLRGNDAKGVFKTFYDTINLKSSIIMGAPDG

Ga0210119_1013916

Ga0210119_10139161

F070125

VTTAEERRQWIEALQAYRDDSERLFALVASLANLLDEEMVVETMESVLGVVAVHDGDCVVFDDLAIRFGSDDRVKSVFRII

Ga0210119_1015021

Ga0210119_10150212

F016165

ARMLLKILSGVLGVAGLCWLALLFSSRAILVSERVEAAALHQQLVCTYFTGSGTMRKEYWYSKSDRFGRAACPRWESVREPE

Ga0210119_1015255

Ga0210119_10152553

F087210

MRFLIAVLALAGAGTALAHTPDTGFLGNFGHQLTSLHHSPAAILLGVLVVALMLVAFRNRTAR

Ga0210119_1016638

Ga0210119_10166381

F012874

AKAGIQNYLKTLDSRLRGNDVKGRFKTFYETINIDYATLYRF

Ga0210119_1019749

Ga0210119_10197492

F099323

VNKILGFWHKFKAFFGHRLILELAILGSFIAYTINPGSLGELMRICGTIFLFNMLIGNYRIGDVTEGHLVVLGIFLITLLINGFMPDEMIHRRSFRYFLAFPGMILAIHCLSKGINPDSRTLLVYSSIAVLAVIFQFITYYTVERVVNAGGLESYGVYSNRHHFGSVASLILPVIVYFATQNKGWLRILCGAAVIVAFFLLWESSSRISWLSFFSSVSVAAFVFLRNKKLLLTL

Ga0210119_1021428

Ga0210119_10214282

F076890

MTGTRSTITTLIAMLVLGVASCSTLDVDDYCRYSEAQSIRKADPGSLALVLGVKPGRTRVSPFVVFRSLSENTPEASITLSGTAAPHTMPMNLDESRCAGVDWGTYTLTVDREAWNAFWLDDRTSHFEVAIAFLDNSEPLMVSAFGAAIVDTAASDYLVACGCYWK

Ga0210119_1022995

Ga0210119_10229952

F036103

LKKLSYIILAIGIATCLIGAYLMAFGEPIIGADHAGIATVVGITGIGMISTGNMLSFARKKKEDQ

Ga0210119_1026866

Ga0210119_10268661

F088437

RYETDAVEKLMTLLFITEDSYRMAGVSQALGLDTQQAGTWLALEGENSRAIQPMALWGLVQWLGQLSPAQLNLALGVDPPHHIIEDEKHTKECDQKAYIPMVYAPKEALIWWIDYIHSVSEVELTASLERFKTISDRLKDITGATVDGWEAAQNALQAAFEGIILAECHFHAMLKLGQHLATYKRQRKKAGRPVSEAEEADIQRAFWNVLKAATPEEYQEALDELPHVFDQEPLASRKQSLVAKQTLFQAWTTDHRLALVTTALDQCMKFLTRKCENMQTFHGKESGVATVNAWAITRNCWRFLKGAKRAGLSPLELAGADFLGIPWMQLVNLLLSIWSSLPFSAQTLQLST

Ga0210119_1030182

Ga0210119_10301821

F088283

MKTQVLLFVPFLAACASCATDADVAGMYAPSCVAFEGSTIELTDQRFTWDKFTDEVTVDAAGGEVDPFPGFPVRGTYTIEGDELRLRTDVGELAAVLHLVRRPGQVYLLTAEEFEAWEKGGAVPNCALL

Ga0210119_1031418

Ga0210119_10314182

F103272

MTDREKELIKYKKQYLNLVNQITRLQLSGKNPPEKLLKQTQEIGRVAEIPETFLKSILP

Ga0210119_1032026

Ga0210119_10320261

F097364

MSIWSSIFGPKLGEVASVEIRPSGLLMDADGWYYEESLDAECSLRTIRVQQDRPGEWYVRNSNCQIAELNSPSRASEVLSFFTGSFRWLRFEREAENGHGPGAIKIIGTFLDGEGAERESHLGYVEAAAAKSLVQQDVRRLWGRIRCLRPPGLGRRPNFCLRFDLLTELDGEMFDDDVKVEARSGNLLPLSP

Ga0210119_1032518

Ga0210119_10325182

F052283

MNTQQKSVIVGAILGATMGALGGYLFTRGLDMPREEEEGFSLSSLPPGAIVSLIISVMAVLRGIAELGEQV

Ga0210119_1039208

Ga0210119_10392082

F072360

MLRSGMNLKPNILKSFSRRTLWIFFILFVSVSFSTSGVIANSCKGGADCLNCAAAAHPHLPGMDVEMVNQGCQSTEQNRSCGFEAGHSADDFDRIATIVTSGTHSYSGIFSIASDESDQAHLHLEFLTQFQYPDRGELTPIFLLNQSLLC

Ga0210119_1039623

Ga0210119_10396231

F012874

VMPAKAGIQNYLKTLDSRLRGSDAKGCFKTFYETINLER

Ga0210119_1044830

Ga0210119_10448301

F104424

LIEEENNFLEFLNYQIIQKNKFEHVARKIPLFKSMIQERHKTIVKMIDKFEDVRRREVYSMLVDEFKKISKRI

Ga0210119_1046181

Ga0210119_10461811

F080659

MTGIPILDTILDLIMQYRLGIAMMGLAVIAIGLLARPIAPEWSAHNRSALAMMVIGGIVLILLPTLAAAIVGG

Ga0210119_1046661

Ga0210119_10466611

F074892

MMPKYALIALLGLLLSACSERGENIYRTRVGPDRSNMAIVTLRLAEDVRDVTIRESVLPRSEYGTILLVPGQYTLYEHDGANIGVNIRPMLVNVEKARANGELILGHTYVLRAGKSKETGERALWIEDARSDEVFVDRR

Ga0210119_1052409

Ga0210119_10524091

F012874

MPAKAGIQNYLKTLDSRLRRNDAKGRFKTFYETINLQYSFPFFPV

Ga0210119_1055983

Ga0210119_10559831

F068280

MNRSFASWITANPGAAVFLTGLLGLLPLFGLGFAF

Ga0210119_1057626

Ga0210119_10576262

F024001

MLNCTNPKGSRKNKFTFLSVEAPAWQGAKAPEYQDISSFRNAAR

Ga0210119_1058776

Ga0210119_10587762

F058158

MRKSYMSDFTKTEKDDIDIWELHVKEREYILAQIANDRRTSRIRNWIELIFMLGFIYYILYDIYKDGDLDTIIKFLKT

Ga0210119_1061701

Ga0210119_10617012

F018541

MYSPKMRSFWVDFPLTDEQYAKLDLRWRRRQNFYEVKNEPLPKVRISSFCTFGGEDYKILSLEARGDIDAYHEALKVMEQWIVEN

Ga0210119_1061954

Ga0210119_10619542

F042907

MTDKMRVEAEDKLFNDLRDEPCIVCGDPYLHVLGSYTPEEPKGSKNREDRAPVLYYTLCRTCFNNGRIPTARIESAYKIKFGKKAA

Ga0210119_1063513

Ga0210119_10635131

F105203

MQQAKHAEQMVNRFRELVEESGDSLSVNHYNELKLIIEAGLDTALLENMSRISERLTVLAHDIQHNADFFE

Ga0210119_1065416

Ga0210119_10654161

F085223

MESINQSEQKRQNRTVTLHLGNTLAEYKAMILTEGGIQTLIRRVEIADSLNWGPLANGHHPGCPRLLHFTHHDSYVRGAKHFDGRQSEITLFRVRCLDCEAVFTIQPSFIVRYKRYDTDALEKFMVLLFITEDSYRMAGISQALGMDTQQAGTWAALEEATGDTISPTALWTLVQWLGQLSPAQLNLALGVDPPSH

Ga0210119_1067555

Ga0210119_10675551

F021566

MFTCKNVDSFTARVLSGLVVSVTIVFGSLTYAVSHMQAFA

Ga0210119_1076689

Ga0210119_10766891

F017852

MNNEKMKRMTLELPDKLGGLEKKHGLKRVGVWTVIPEHLLVWVYEAPSSEALQNFSMEPEMIKWMAWNTSEIKLAMSLEESIKLLE

Ga0210119_1077390

Ga0210119_10773901

F042358

LKNEEQFSIYMALDGPHLDGLIGSAGIMRFDWPEREFYIQHYEGISAAHNVSLAPNGKLALLGNFSQQIVLLDVSNPQAMKLMARQATQYFEECPYRLRANTHHLWYPDNERFIGAIGDNLYRFHVDNLKEPEQLGPHYLFNAHEIRWDPDRRFILVGDLGPEDTDARQIAV

Ga0210119_1077543

Ga0210119_10775431

F104423

VEVHRIRKSKALYDKKRSHIFLEVEKNRWLEIETLVGVTYESIQTFLECEKKTGIRIVGFTEQNFQWGTIKDWSHSGIIKDLKSKKK

Ga0210119_1085768

Ga0210119_10857681

F085722

MARKAIVGIFVVLMAMVQTGCSNPQKEAARASTEASEAEKDVSEQKAKILEDYRKCLNKNKSDEEACAGYKKALDS

Ga0210119_1087495

Ga0210119_10874952

F018371

MDYSNIIQPKRLTNMQEMEVHVNGPDGANRLFMYSGMAEVELCGGLPHPRWSLEVVCFDIGRRYDIENEAVIKILANAALAGGRTDGVASFAGWQIFGAAGELDHEDCRVRMNIAAGARDTQAFLEQIS

Ga0210119_1093544

Ga0210119_10935442

F093176

MTMVRRILLVFVICALAVAYLYQASYSVKLTRRLSRLEVERQLLAERLEGVGAEIVILSGFARMESLWVAQGRPAAPTDRTVVADGQVVAMAKHPGADAAAR

Ga0210119_1098064

Ga0210119_10980641

F069741

MENVFFDVDQFSRLDKIEQARRLEEAERRIDEVQRAAADDPDSLSWVDQQRQYLVDMQHLIF

Ga0210119_1113634

Ga0210119_11136341

F005815

MTMNTTRLTMYWTTGEAATVIDFIDTLRDALWETYGEQITRMHREDHDDRIRDSNQCEFEFNDEIPF

Ga0210119_1121014

Ga0210119_11210141

F058721

MTMLRATLPCADPKCKEKMRLVFQNERFIGYRCLLKPNTHNFRYDRAHKRWEKIIINTKPIIGYKESPHDIRFEEELVVESI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025561: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordC_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences