NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025308

3300025308: Soil microbial communities from Rifle, Colorado, USA - Groundwater A2



Overview

Basic Information
IMG/M Taxon OID3300025308 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0054360 | Ga0209211
Sample NameSoil microbial communities from Rifle, Colorado, USA - Groundwater A2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size1499031777
Sequencing Scaffolds29
Novel Protein Genes29
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → cellular organisms → Bacteria9
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → Desulfatitalea tepidiphila1
All Organisms → cellular organisms → Bacteria → Proteobacteria3
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA1171
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA31
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → unclassified Sphingobacteriaceae → Sphingobacteriaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → planetary subsurface zone → groundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002400Metagenome / Metatranscriptome563Y
F004511Metagenome / Metatranscriptome435Y
F008005Metagenome / Metatranscriptome341Y
F009862Metagenome / Metatranscriptome312Y
F014796Metagenome260Y
F016087Metagenome / Metatranscriptome250Y
F026431Metagenome198Y
F027235Metagenome / Metatranscriptome195Y
F041503Metagenome / Metatranscriptome160Y
F043160Metagenome / Metatranscriptome157N
F045296Metagenome153Y
F045635Metagenome / Metatranscriptome152Y
F056711Metagenome / Metatranscriptome137Y
F065251Metagenome / Metatranscriptome128Y
F068996Metagenome / Metatranscriptome124Y
F069483Metagenome / Metatranscriptome124Y
F078444Metagenome116Y
F081499Metagenome / Metatranscriptome114Y
F082080Metagenome / Metatranscriptome113N
F085179Metagenome / Metatranscriptome111Y
F087945Metagenome110N
F091390Metagenome107Y
F091594Metagenome / Metatranscriptome107Y
F104327Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209211_10004245All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon22535Open in IMG/M
Ga0209211_10005124All Organisms → cellular organisms → Bacteria19834Open in IMG/M
Ga0209211_10017819All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria8273Open in IMG/M
Ga0209211_10024842All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → Desulfatitalea tepidiphila6505Open in IMG/M
Ga0209211_10026504All Organisms → cellular organisms → Bacteria6198Open in IMG/M
Ga0209211_10036884All Organisms → cellular organisms → Bacteria → Proteobacteria4814Open in IMG/M
Ga0209211_10051298All Organisms → cellular organisms → Bacteria3744Open in IMG/M
Ga0209211_10064538All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3148Open in IMG/M
Ga0209211_10067848All Organisms → cellular organisms → Bacteria3028Open in IMG/M
Ga0209211_10071687All Organisms → cellular organisms → Archaea2906Open in IMG/M
Ga0209211_10073606All Organisms → cellular organisms → Bacteria → Proteobacteria2844Open in IMG/M
Ga0209211_10083312All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2590Open in IMG/M
Ga0209211_10085310All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2543Open in IMG/M
Ga0209211_10094740All Organisms → cellular organisms → Bacteria2346Open in IMG/M
Ga0209211_10119779All Organisms → cellular organisms → Bacteria1965Open in IMG/M
Ga0209211_10148950All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA1171662Open in IMG/M
Ga0209211_10161903All Organisms → cellular organisms → Bacteria1559Open in IMG/M
Ga0209211_10200039All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1323Open in IMG/M
Ga0209211_10203692All Organisms → cellular organisms → Bacteria1305Open in IMG/M
Ga0209211_10204873All Organisms → cellular organisms → Archaea1299Open in IMG/M
Ga0209211_10279985All Organisms → cellular organisms → Bacteria → Proteobacteria1018Open in IMG/M
Ga0209211_10298189All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia969Open in IMG/M
Ga0209211_10310750All Organisms → cellular organisms → Bacteria938Open in IMG/M
Ga0209211_10366960All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium819Open in IMG/M
Ga0209211_10421797All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3728Open in IMG/M
Ga0209211_10439063All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium703Open in IMG/M
Ga0209211_10484580All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium644Open in IMG/M
Ga0209211_10588404Not Available523Open in IMG/M
Ga0209211_10597382All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → unclassified Sphingobacteriaceae → Sphingobacteriaceae bacterium515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209211_10004245Ga0209211_1000424512F091390MVTKSTKSTNINSTTIRISSSTKEALENLDFVRKDTFEEILLKLIEHYKNKK
Ga0209211_10005124Ga0209211_1000512417F016087MEKFWRILGSLVDFLGTLAMVFLALAFAFSIGYHVGFTSGLDTKVTWVGEKYTMKAIGTGKR
Ga0209211_10017819Ga0209211_100178193F056711MGRGTQSPCPLCFPLRIRMRKAFTALAAAAFALSIVAGGCAKDKSPSQLQAGKKGIAGTEKKAAPKPRAKLFTGTIEDLDEAAGTLTLKGPKGEMSFQARKKVKEQLGELEIGDKVIVKHDGKTALSIVKPRTSKTALAWYRNEETETVREEFH
Ga0209211_10024842Ga0209211_100248426F056711MLAAAAFALAILAGGCAKDKSPPRLQPAKKGIAGAEKKAAPKPRAKLFTGTIEDLDEAAGTLTLKGPKGEMSFQAREKVKEQLGELELGDKVIVKHDGKTALSIVKPRTSKTALALYRNEEPGKSHPNFSNQ
Ga0209211_10026504Ga0209211_100265045F056711MRKAFTVLAAAAFALSIVAGGCAKDKSPSQIQPAKKGIAGTEKKAAPKPRAKLFTGTIEDLDEAAGTLTLKGPKGEMSFQARKKVKEQLCELEIGDKVIVKHDGKTALSIVKPRTSKTALAWHRNEETETVREEFH
Ga0209211_10036884Ga0209211_100368845F041503MKRAGLAALLALGAMGPVPAPAGEAATSRRAYYLFLAGAPQGCEDCYVPLIIARQPLEDVATSGRDTTIVLITTYERDSIWKVERGVSLAAADVSPAERIVRLRGRRYRYQEIAPAEVLRLLEKPEGTVPIHRMMPTPEKTSLEDLLAAFRHHRPR
Ga0209211_10051298Ga0209211_100512982F104327MKSTTQPRDEFFPDTIELGPVKSEHLTVLQRVVPKAEFATYAATLTDALLEEQSAIEAYVRIRNVSDILDQALGRIKDRAIRSMQGTTADICGAQVQLKSLPKRYEYQDSVVDDLESQKKAIEERLKARKKLLENLPADVADTATGEIIHPARFVSGGSTLQITF
Ga0209211_10064538Ga0209211_100645383F085179VRILNSNRRKAKSSRKIAIFLLFVYYAMGTGLVDSSVLCLGKDGHLAMESAASCALCGVRTILPVQPESLIPEGNPAPGCGPCQDFSINSAREFSGIAVPLPSESDRSDLALQSMELAEGFLATVAFASSVSGPLEFPDPIALHARTVVLLI
Ga0209211_10067848Ga0209211_100678481F069483SPLESKWRAPSERIRTASEIPIEVNLTDEDAVPVYMKISEKVLHLRRLGMAYATIAERLKINLWMAKRAARWGNLQKS
Ga0209211_10071687Ga0209211_100716872F065251MYLRSFIKGGKKYYYVAKAVRKGTRVIQKSILYIGTADTLYEKLSSLKKK
Ga0209211_10073606Ga0209211_100736063F091594MSNNGITHYCLGNGELKCDGCQQQKNWKTLNQMPDALRKPLQTQAQRIDDTDCILAGRPWRVEA
Ga0209211_10083312Ga0209211_100833123F045296FRTDKNVAYKAIIHITRLKDPILLERTYQSYLKQYEAIGGLPYPWETGIESMITGFHARFTPAIVKNKDAKPFLDPSFVQKASERLGLPRR
Ga0209211_10085310Ga0209211_100853102F068996VRGKWAPRKEVREMGYLMIGIAFIVLAVIAAVRVRAGHA
Ga0209211_10094740Ga0209211_100947404F081499VKVSSPENAYVVEQGDVVRNTEYSNEVIVIGEKEVLS
Ga0209211_10119779Ga0209211_101197793F045635VADYILSRQFLEDMAAFEKSASARDLENVEKAIAAIAQAPNLPGRVPSFYDPSLPSYLYRSGNLLIHYRTPHPGIVEFLNLFWPKV
Ga0209211_10148950Ga0209211_101489502F002400MPIKKKSSRPAACAHCAGTDLVRRIATYPVHLTGPLEGKQIHVGRVALYECQSCGSLMPTPAGRAKVERNLAMGIRLFLGQFP
Ga0209211_10161903Ga0209211_101619033F014796GGTGESLAALMTGRVDVAMIAYPYDLTAKKAGFHLLFRPSETEYGLFPTTVIAARESWARDVKNRKVAIDFLRALNEGLLLARENATVSKRALSKYTRVNDDAALQSSFDFYKSAFSSTLRIVEKAMANALKFIDHPKAKQADVKQFYDNSLVDEAMK
Ga0209211_10200039Ga0209211_102000392F087945MGGVPAEIIGDRTAGQTCDDWNPSDHPEFREFLDHVAEILAHEYVQRMRETADPKDIEAWEKGGQ
Ga0209211_10203692Ga0209211_102036922F009862MKQPKEQKPLLVRCPNCKQLREPDYNELTHRYVCSLCAAPVDAQVLIEKKKRGLR
Ga0209211_10204873Ga0209211_102048731F065251MYLRSFNKSGKKYYYIAKAVRKGTKVIQKSVLYIGTADKIYEKLRKH
Ga0209211_10279985Ga0209211_102799852F004511MVFVSRSDQDVSSAAELFDLLWESLADVLGTAATATLLRRAIRQAASQASWSEPVTVARNGLDYVYRLPETWKQPGNEEAIGALRVVAAELRVLLVELTGPVVVRRLARLAPFRKRGIDFSEEEPK
Ga0209211_10298189Ga0209211_102981892F078444MEHSSEKVLNEQTSEEIIEIDENGVVHAKGRTLEKLKKTVLRDPEGEY
Ga0209211_10310750Ga0209211_103107502F008005NFGIEFIKGPHLDIEGDRNRFGERVYDAMQPVYLESGAVDEELQREMIADAAQRIKPAQPVPPERVFDFSFARKVSETLR
Ga0209211_10366960Ga0209211_103669602F087945MGGVPAEIIGDRTAEHPCDDWTPTDHPEFREFLDHVAEILAHEYVQRMRETADPIDIEAWEKGGQ
Ga0209211_10421797Ga0209211_104217972F026431MISWVAMDRIVERGISLDAKLRKRAAGRPLRSHARVLTDGELLARLRTFGIDLDRSSLERLCDQALSAEEIAKRLLDARSDQTERVRFDSDWIW
Ga0209211_10439063Ga0209211_104390632F027235VPEPVRPAGPPLAWGAMDSYVVRIYRRAGAKSRILIGTVEAAGTEKRLGFSNIEELWEILGRRKGRDLCAPPSPRRRLRKEVMSATAASGIEEPAEGVRQMKPDFRTLRGGIR
Ga0209211_10484580Ga0209211_104845802F027235AMDSYVVRIYRRGGKKSHVLIGTVEVAGTERKMAFSNIEELWGILRRGKGRDLCAPPSPRRRLRKEVMRATATSDIEDSAEGIRQTKPTVGH
Ga0209211_10588404Ga0209211_105884041F082080EIPGLMTDKEAARLYRLEDIGVCLWGYWGVERPGQPKLASKLAKEALQFSTDSSSRELQTSLLHRDIGKGRILLSLPSLKVVSPNLAEVTEKNEGPVLVAVEGDDYETWTYGVWLYRLVRRIYPARGKGGKPGQVSWKIVAAWLQEEPALLGQFVDLLVDRKLRTWEQEQKGVA
Ga0209211_10597382Ga0209211_105973822F043160MAKKNFDNLTKNSHLGGGLSNLIPEMNEKHESKKNKVASNDVPKTFLMLPEDYEYLQTYSRYMAFHNNSKYPLKRSL
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