NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025243

3300025243: Marine microbial communities from the Deep Atlantic Ocean - MP0759 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025243 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053074 | Gp0053865 | Ga0208335
Sample NameMarine microbial communities from the Deep Atlantic Ocean - MP0759 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size121405408
Sequencing Scaffolds35
Novel Protein Genes38
Associated Families34

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus2
Not Available19
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Eukaryota3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationWest of Cape Town, South Africa, South Atlantic Ocean
CoordinatesLat. (o)-32.81Long. (o)12.77Alt. (m)N/ADepth (m)3901.64
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F001625Metagenome / Metatranscriptome661Y
F002030Metagenome601Y
F002753Metagenome / Metatranscriptome532Y
F003122Metagenome / Metatranscriptome506Y
F005608Metagenome / Metatranscriptome395Y
F006551Metagenome / Metatranscriptome370Y
F007773Metagenome345Y
F008648Metagenome330Y
F008912Metagenome / Metatranscriptome326Y
F016284Metagenome / Metatranscriptome248Y
F018739Metagenome / Metatranscriptome233Y
F019388Metagenome / Metatranscriptome230N
F023136Metagenome / Metatranscriptome211Y
F024888Metagenome204Y
F031665Metagenome / Metatranscriptome182Y
F034700Metagenome174Y
F035337Metagenome172N
F041248Metagenome / Metatranscriptome160Y
F042383Metagenome / Metatranscriptome158Y
F045695Metagenome / Metatranscriptome152Y
F047117Metagenome150Y
F050430Metagenome / Metatranscriptome145N
F055778Metagenome / Metatranscriptome138Y
F063768Metagenome / Metatranscriptome129N
F066848Metagenome / Metatranscriptome126N
F080654Metagenome / Metatranscriptome115N
F081452Metagenome / Metatranscriptome114N
F082562Metagenome113N
F085813Metagenome111N
F089050Metagenome / Metatranscriptome109Y
F089571Metagenome109N
F094378Metagenome / Metatranscriptome106Y
F099485Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208335_1000053All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria52122Open in IMG/M
Ga0208335_1000733All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus10803Open in IMG/M
Ga0208335_1000959Not Available8845Open in IMG/M
Ga0208335_1001831All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5389Open in IMG/M
Ga0208335_1003867All Organisms → cellular organisms → Bacteria3211Open in IMG/M
Ga0208335_1006108Not Available2385Open in IMG/M
Ga0208335_1006133All Organisms → cellular organisms → Bacteria2378Open in IMG/M
Ga0208335_1006821All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus2223Open in IMG/M
Ga0208335_1009311All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1804Open in IMG/M
Ga0208335_1010063Not Available1712Open in IMG/M
Ga0208335_1010803All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1633Open in IMG/M
Ga0208335_1015357Not Available1287Open in IMG/M
Ga0208335_1016977Not Available1203Open in IMG/M
Ga0208335_1018587Not Available1132Open in IMG/M
Ga0208335_1021407Not Available1024Open in IMG/M
Ga0208335_1026283Not Available890Open in IMG/M
Ga0208335_1026347All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium888Open in IMG/M
Ga0208335_1028505Not Available840Open in IMG/M
Ga0208335_1028993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium830Open in IMG/M
Ga0208335_1030315Not Available806Open in IMG/M
Ga0208335_1031811Not Available779Open in IMG/M
Ga0208335_1038350Not Available680Open in IMG/M
Ga0208335_1039163Not Available670Open in IMG/M
Ga0208335_1040164Not Available658Open in IMG/M
Ga0208335_1042757All Organisms → cellular organisms → Eukaryota629Open in IMG/M
Ga0208335_1044173Not Available614Open in IMG/M
Ga0208335_1045186Not Available604Open in IMG/M
Ga0208335_1046307Not Available594Open in IMG/M
Ga0208335_1046407All Organisms → cellular organisms → Eukaryota593Open in IMG/M
Ga0208335_1047202All Organisms → cellular organisms → Eukaryota586Open in IMG/M
Ga0208335_1051092All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon551Open in IMG/M
Ga0208335_1052440All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote540Open in IMG/M
Ga0208335_1053528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium532Open in IMG/M
Ga0208335_1056227Not Available512Open in IMG/M
Ga0208335_1056905Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208335_1000053Ga0208335_100005318F063768MDLHATPDPLTTAEGVAEFVVLAELSTALSERLGGWSTDGADPDSSATMASLAARLDEHSTWWTGRIPESVLLEGERTAASGSGQLAEVLGLLDVAASDRRAAVEPVLDRLVAYLVALAERLSPLGDAPAIRTIRLVLADLEDRPR
Ga0208335_1000733Ga0208335_100073314F099485MKQQIIHNWQHSPPKTQVARTPVKAVSKPLRQSQTITNEDLMGLSWIMFEESD
Ga0208335_1000959Ga0208335_10009594F085813MDQFEIIWILVTVIGALNYGFNAYQKGFRRLLKWDVISLIILDTLMFVPLSLIVGL
Ga0208335_1001831Ga0208335_10018315F066848MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDSVLRTVLAGARQIAADQRLPVDPVAKGAGSEPELNLVA
Ga0208335_1003867Ga0208335_10038671F085813TLNYGLNAYQKGFRRLLKWDVIFLIVLNTLMFVPLSLIVGL
Ga0208335_1006108Ga0208335_10061081F042383MKGIKMETTYNNFSNPDDFYEGPSDEELKKIEEDLERYSD
Ga0208335_1006133Ga0208335_10061331F082562MKIIILGILISLSTNLFAQTNDSLRNYNLDIELSIIHTILGCFGGTIGIEKNHSGFGVMGFGTKLNHMTKHYLMENAEELAVYNWGIELYSDYYFKQNHRGLFIGTFVSLNGFRFTDIPNPQTILVLYAVPRIGYRKYLPKKKNAFYFQPSLTLHSKVWDNQEQFLYREIDTKRIFLLSQLTIGMKI
Ga0208335_1006821Ga0208335_10068212F055778MLSNVDLPEPELPTIRTISPRSIESDTLSRAFIFNSPSP
Ga0208335_1009311Ga0208335_10093112F089571MFIIYLDKENGRKMLKNIIVIVFTVLFLVVPASSQHAQQKYAITDKDKKVILNDDGTWEYIEEGKQNNNYKRVPPKTYDYEFKPQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARRE
Ga0208335_1010063Ga0208335_10100634F005608MKKATIEILEEGELIFGSPTAGKYFVRRYEDETEMGGGFFKTKKEAETHAREYKKSE
Ga0208335_1010803Ga0208335_10108031F082562MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDKKKFLYREIDTKSIFLLSQLTLGVKI
Ga0208335_1015357Ga0208335_10153571F008912MKNLVVTLGITGCGKSRWLKDKSPVIETDDLRIELLDDISDSTTQEGLIFGTAAKKISKLFDTHDTVYFGATLVDSKYRIPFLQSIQDVCKHKLVIDVVIFPGIPELSKERIARDLKSGVQRADSIKFIDEQYEQYLHTMSIFNKEKNFYRSIKRSAE
Ga0208335_1016977Ga0208335_10169772F094378SNHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY
Ga0208335_1018587Ga0208335_10185872F035337MEYNLPVEITWNEEDQATIDIICDACEKRYIILTNDISNLEQCSFCGHYLEVSTEDIHEFQEDSWD
Ga0208335_1018587Ga0208335_10185873F047117KDITIEEGQEFANVKQQQINRKQMRITASFHMKHGLYKKPEFKFFQSIGMFNFFQGFKSDDLDLGVYHLYWDRDAENTIEYYDPKTGERTNNIKGDWRERWYDPGEEIKPVEMDNPYRPDPAKMAKWWMETQGSIQAKIMMKQQEKAETEDEENRPWHHIPKPQWEN
Ga0208335_1021407Ga0208335_10214073F002030DMIGFLIFGLVVLSTVCLWLLIEERKSPKFLIWFIPVLLVLVTSTYVTYTSILGFPKVGIPERGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYTREKHNALEGVRGKAEEGNFMILGKDEVLGYGNGGDDHRGSSPGSGYTIGGDISFYKWDFAENMPPKNTQE
Ga0208335_1026283Ga0208335_10262831F024888MNLDKIDLKNIHKIVGEMVGAIQKEEMKGKTPDEFAQEKGFSDWLEYAAWSRHTGGDYQMMEMMLKSKWKEQDPEEFARQKKIEGDQSTREHSYIGILDEEKIKKKNNGHKYYKPVHKSEFSAEELEVIYDERGVGGEPVEYRW
Ga0208335_1026283Ga0208335_10262832F001048MEYFSNWSIMKIKSTKQFWWRFNHLKRNGGEITVTDRTTEMDVKDFNRIESLVHKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIS
Ga0208335_1026347Ga0208335_10263471F023136SDKNAIIKKDRNTIPKDLILDFKFKICFVETIKEANIQNCVKKTIGITNSGVTAKNLTKPGAWA
Ga0208335_1028505Ga0208335_10285052F008648MKSFKGYLIERGTSLSDLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDSDGVKSISKLEGKKGQISAFFSMFSRYMEVGVATQGGVHAVLEMDADVLLSASGDVMSHLDQSGRRWTSISDLKETSRWTKFSAVEKDLEKMFDPLVKKYLKKGEFQENATVWELWRMA
Ga0208335_1028993Ga0208335_10289931F041248MRSKQHGKRLRQEGAIERIETSILVHEEQLKSNKNDDEKKLLKKKIERAQATVENTKGNM
Ga0208335_1030315Ga0208335_10303152F081452TLADAHLLSRLFMIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA
Ga0208335_1031811Ga0208335_10318112F018739MTTQNYEPTLDLVKERMAKIDGLIEKFRDLPDVQQKLQGAKDALQESEEEIMNYFDLTDIVKRDLN
Ga0208335_1038350Ga0208335_10383501F080654NSRLLKKKPGIQDSKKINAEILETVVADIISEETAESEPVGKTNLEERQDLWNKIQKFDPEASAMDYYDNGEWDLEKRRSDVKVLLEKKRFGRYI
Ga0208335_1039163Ga0208335_10391632F003122MIELLIFGLVLLSVICLWLLIEGRKSPKFLIWFIPLLLILVSSTYMTYTAIQGYPKFETPKRGLYLKHYIDEPNWIYIWVIDKEQIPISYKIVYSREVHNALEGVKGKSEEGKFMVLGGEETEQAGMQGEEDGEHAGGHTIGGDISFYEWDYESSMPQKNPKE
Ga0208335_1040164Ga0208335_10401642F050430MDNKLKENLMVGTKIVGMLFFLIVLITTLVWPGGVDTLANLFFTKE
Ga0208335_1042757Ga0208335_10427571F002753NTVSDRFTPAAFDIESVKLTVSDRFTPAVFEIESVKLTDSDRFTPAVFDIESVNNTVSDRFTPVDFATESVKLTDSDRFTPSVFETESVKLTDSDRFTPSVFETESVKLTVSDRFTPAAFEIESVKLTVSDRFTPAVFDIESVNNTVSDRFTPAVFEIESVNDTDSDRFTGAVFEIESVKLTVSDRFTPAVFEIESVNNTVSDRFTPAV
Ga0208335_1044173Ga0208335_10441731F089050MVELNHDVVSFNSDTLVKGGHGVLVSVYVTKVGSGSNKVEFKNGT
Ga0208335_1044173Ga0208335_10441732F001625MALTISTSDWTNANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANSSSATNSKIFEFLVIGY
Ga0208335_1045186Ga0208335_10451862F031665MEEQITQWVAPLVGLGITAIIVLWFKEAVGDVVASIRWKMKPGFEPGDVVYLDGEEATIVSIGFRETIFELNNGRGKVWRYIYNKRIPYHKLEKIISGMGDDK
Ga0208335_1046307Ga0208335_10463071F019388MQSPNEQNPYLVETKNGKILKFNKIDADNEAATKQLDGDDVEVFHDGKLQYRLHGIEQGKLF
Ga0208335_1046407Ga0208335_10464071F002753AALDIESVNDTDSDRFTPAALDIESVNDTDSDRFTPTVFEIESVNNTVSDRFTPAVFDVSSVNDIDSDRFTPAVFEIESVKLTDSERFTPAAFAIESVKLTDSERFTPAAFAIESVKLTVSVRFTPADFEIESANNTVSDRFTSAALDVSSVNNTVSDRFTPAALDVSSVNNTVSDRFTPADFEIESANNTVSDRFT
Ga0208335_1047202Ga0208335_10472021F002753DTDSVRFTPAAFDIESVKLTVSDRFTPAAFDIESVKLAVSDRFTPAAFAIESVKITVSDRFTPAAFEIESVKLTVSDRFTPAVFEIESVKLTVSDRFTPAVFEIESVNDTDSDRFTPAVFEIESVKLTVSDRFTPAVFEIESVKLTVSDRFTPADFAIESVKLTVSDRFTPADFAIESVKLTVSDRFTPAVFEIE
Ga0208335_1051092Ga0208335_10510921F016284MTSKTLKNMRKELLDKYSGKITGYEHLDDGTGDYARIVPKDFEKESEETSEKT
Ga0208335_1052440Ga0208335_10524402F007773VSKNNIINLSDYRKEKEKETPQNPPQYIQDFEVGGYYIYPELGVMLHCMLITDSSHTHKNELMYIMEDQFGNIFSVPIDDPDSMMGWRLLEKEV
Ga0208335_1053528Ga0208335_10535282F034700MAEEEPIVDFGFSAVTADEYERDNTDGENTGSGGSASPGALASMDAKIEQIMAALSSKSDAPPDDFGFSQEDK
Ga0208335_1056227Ga0208335_10562272F045695MNSKREAFLRIWNKEAPKIRDTIKQKLLVRGIEPTQLNCYEYWMGYIKPWKNTRGDISHLNPYRNEGFMRSIGRTKYGTPYNMARRNKNKKR
Ga0208335_1056905Ga0208335_10569051F006551FESLDRIVSTSAEEGTLGGSGSGHYDPWAANATIDRDSGTAFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYG

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