Basic Information | |
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IMG/M Taxon OID | 3300025243 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0053865 | Ga0208335 |
Sample Name | Marine microbial communities from the Deep Atlantic Ocean - MP0759 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 121405408 |
Sequencing Scaffolds | 35 |
Novel Protein Genes | 38 |
Associated Families | 34 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 2 |
Not Available | 19 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
All Organisms → cellular organisms → Eukaryota | 3 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine water body → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | West of Cape Town, South Africa, South Atlantic Ocean | |||||||
Coordinates | Lat. (o) | -32.81 | Long. (o) | 12.77 | Alt. (m) | N/A | Depth (m) | 3901.64 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001048 | Metagenome / Metatranscriptome | 793 | Y |
F001625 | Metagenome / Metatranscriptome | 661 | Y |
F002030 | Metagenome | 601 | Y |
F002753 | Metagenome / Metatranscriptome | 532 | Y |
F003122 | Metagenome / Metatranscriptome | 506 | Y |
F005608 | Metagenome / Metatranscriptome | 395 | Y |
F006551 | Metagenome / Metatranscriptome | 370 | Y |
F007773 | Metagenome | 345 | Y |
F008648 | Metagenome | 330 | Y |
F008912 | Metagenome / Metatranscriptome | 326 | Y |
F016284 | Metagenome / Metatranscriptome | 248 | Y |
F018739 | Metagenome / Metatranscriptome | 233 | Y |
F019388 | Metagenome / Metatranscriptome | 230 | N |
F023136 | Metagenome / Metatranscriptome | 211 | Y |
F024888 | Metagenome | 204 | Y |
F031665 | Metagenome / Metatranscriptome | 182 | Y |
F034700 | Metagenome | 174 | Y |
F035337 | Metagenome | 172 | N |
F041248 | Metagenome / Metatranscriptome | 160 | Y |
F042383 | Metagenome / Metatranscriptome | 158 | Y |
F045695 | Metagenome / Metatranscriptome | 152 | Y |
F047117 | Metagenome | 150 | Y |
F050430 | Metagenome / Metatranscriptome | 145 | N |
F055778 | Metagenome / Metatranscriptome | 138 | Y |
F063768 | Metagenome / Metatranscriptome | 129 | N |
F066848 | Metagenome / Metatranscriptome | 126 | N |
F080654 | Metagenome / Metatranscriptome | 115 | N |
F081452 | Metagenome / Metatranscriptome | 114 | N |
F082562 | Metagenome | 113 | N |
F085813 | Metagenome | 111 | N |
F089050 | Metagenome / Metatranscriptome | 109 | Y |
F089571 | Metagenome | 109 | N |
F094378 | Metagenome / Metatranscriptome | 106 | Y |
F099485 | Metagenome / Metatranscriptome | 103 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0208335_1000053 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 52122 | Open in IMG/M |
Ga0208335_1000733 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 10803 | Open in IMG/M |
Ga0208335_1000959 | Not Available | 8845 | Open in IMG/M |
Ga0208335_1001831 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 5389 | Open in IMG/M |
Ga0208335_1003867 | All Organisms → cellular organisms → Bacteria | 3211 | Open in IMG/M |
Ga0208335_1006108 | Not Available | 2385 | Open in IMG/M |
Ga0208335_1006133 | All Organisms → cellular organisms → Bacteria | 2378 | Open in IMG/M |
Ga0208335_1006821 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus | 2223 | Open in IMG/M |
Ga0208335_1009311 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1804 | Open in IMG/M |
Ga0208335_1010063 | Not Available | 1712 | Open in IMG/M |
Ga0208335_1010803 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1633 | Open in IMG/M |
Ga0208335_1015357 | Not Available | 1287 | Open in IMG/M |
Ga0208335_1016977 | Not Available | 1203 | Open in IMG/M |
Ga0208335_1018587 | Not Available | 1132 | Open in IMG/M |
Ga0208335_1021407 | Not Available | 1024 | Open in IMG/M |
Ga0208335_1026283 | Not Available | 890 | Open in IMG/M |
Ga0208335_1026347 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 888 | Open in IMG/M |
Ga0208335_1028505 | Not Available | 840 | Open in IMG/M |
Ga0208335_1028993 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 830 | Open in IMG/M |
Ga0208335_1030315 | Not Available | 806 | Open in IMG/M |
Ga0208335_1031811 | Not Available | 779 | Open in IMG/M |
Ga0208335_1038350 | Not Available | 680 | Open in IMG/M |
Ga0208335_1039163 | Not Available | 670 | Open in IMG/M |
Ga0208335_1040164 | Not Available | 658 | Open in IMG/M |
Ga0208335_1042757 | All Organisms → cellular organisms → Eukaryota | 629 | Open in IMG/M |
Ga0208335_1044173 | Not Available | 614 | Open in IMG/M |
Ga0208335_1045186 | Not Available | 604 | Open in IMG/M |
Ga0208335_1046307 | Not Available | 594 | Open in IMG/M |
Ga0208335_1046407 | All Organisms → cellular organisms → Eukaryota | 593 | Open in IMG/M |
Ga0208335_1047202 | All Organisms → cellular organisms → Eukaryota | 586 | Open in IMG/M |
Ga0208335_1051092 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon | 551 | Open in IMG/M |
Ga0208335_1052440 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 540 | Open in IMG/M |
Ga0208335_1053528 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium | 532 | Open in IMG/M |
Ga0208335_1056227 | Not Available | 512 | Open in IMG/M |
Ga0208335_1056905 | Not Available | 508 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0208335_1000053 | Ga0208335_100005318 | F063768 | MDLHATPDPLTTAEGVAEFVVLAELSTALSERLGGWSTDGADPDSSATMASLAARLDEHSTWWTGRIPESVLLEGERTAASGSGQLAEVLGLLDVAASDRRAAVEPVLDRLVAYLVALAERLSPLGDAPAIRTIRLVLADLEDRPR |
Ga0208335_1000733 | Ga0208335_100073314 | F099485 | MKQQIIHNWQHSPPKTQVARTPVKAVSKPLRQSQTITNEDLMGLSWIMFEESD |
Ga0208335_1000959 | Ga0208335_10009594 | F085813 | MDQFEIIWILVTVIGALNYGFNAYQKGFRRLLKWDVISLIILDTLMFVPLSLIVGL |
Ga0208335_1001831 | Ga0208335_10018315 | F066848 | MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDSVLRTVLAGARQIAADQRLPVDPVAKGAGSEPELNLVA |
Ga0208335_1003867 | Ga0208335_10038671 | F085813 | TLNYGLNAYQKGFRRLLKWDVIFLIVLNTLMFVPLSLIVGL |
Ga0208335_1006108 | Ga0208335_10061081 | F042383 | MKGIKMETTYNNFSNPDDFYEGPSDEELKKIEEDLERYSD |
Ga0208335_1006133 | Ga0208335_10061331 | F082562 | MKIIILGILISLSTNLFAQTNDSLRNYNLDIELSIIHTILGCFGGTIGIEKNHSGFGVMGFGTKLNHMTKHYLMENAEELAVYNWGIELYSDYYFKQNHRGLFIGTFVSLNGFRFTDIPNPQTILVLYAVPRIGYRKYLPKKKNAFYFQPSLTLHSKVWDNQEQFLYREIDTKRIFLLSQLTIGMKI |
Ga0208335_1006821 | Ga0208335_10068212 | F055778 | MLSNVDLPEPELPTIRTISPRSIESDTLSRAFIFNSPSP |
Ga0208335_1009311 | Ga0208335_10093112 | F089571 | MFIIYLDKENGRKMLKNIIVIVFTVLFLVVPASSQHAQQKYAITDKDKKVILNDDGTWEYIEEGKQNNNYKRVPPKTYDYEFKPQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARRE |
Ga0208335_1010063 | Ga0208335_10100634 | F005608 | MKKATIEILEEGELIFGSPTAGKYFVRRYEDETEMGGGFFKTKKEAETHAREYKKSE |
Ga0208335_1010803 | Ga0208335_10108031 | F082562 | MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDKKKFLYREIDTKSIFLLSQLTLGVKI |
Ga0208335_1015357 | Ga0208335_10153571 | F008912 | MKNLVVTLGITGCGKSRWLKDKSPVIETDDLRIELLDDISDSTTQEGLIFGTAAKKISKLFDTHDTVYFGATLVDSKYRIPFLQSIQDVCKHKLVIDVVIFPGIPELSKERIARDLKSGVQRADSIKFIDEQYEQYLHTMSIFNKEKNFYRSIKRSAE |
Ga0208335_1016977 | Ga0208335_10169772 | F094378 | SNHLGNFQAKGPYIITLERRLSLTEGVNLSGNKTEGVY |
Ga0208335_1018587 | Ga0208335_10185872 | F035337 | MEYNLPVEITWNEEDQATIDIICDACEKRYIILTNDISNLEQCSFCGHYLEVSTEDIHEFQEDSWD |
Ga0208335_1018587 | Ga0208335_10185873 | F047117 | KDITIEEGQEFANVKQQQINRKQMRITASFHMKHGLYKKPEFKFFQSIGMFNFFQGFKSDDLDLGVYHLYWDRDAENTIEYYDPKTGERTNNIKGDWRERWYDPGEEIKPVEMDNPYRPDPAKMAKWWMETQGSIQAKIMMKQQEKAETEDEENRPWHHIPKPQWEN |
Ga0208335_1021407 | Ga0208335_10214073 | F002030 | DMIGFLIFGLVVLSTVCLWLLIEERKSPKFLIWFIPVLLVLVTSTYVTYTSILGFPKVGIPERGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYTREKHNALEGVRGKAEEGNFMILGKDEVLGYGNGGDDHRGSSPGSGYTIGGDISFYKWDFAENMPPKNTQE |
Ga0208335_1026283 | Ga0208335_10262831 | F024888 | MNLDKIDLKNIHKIVGEMVGAIQKEEMKGKTPDEFAQEKGFSDWLEYAAWSRHTGGDYQMMEMMLKSKWKEQDPEEFARQKKIEGDQSTREHSYIGILDEEKIKKKNNGHKYYKPVHKSEFSAEELEVIYDERGVGGEPVEYRW |
Ga0208335_1026283 | Ga0208335_10262832 | F001048 | MEYFSNWSIMKIKSTKQFWWRFNHLKRNGGEITVTDRTTEMDVKDFNRIESLVHKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIS |
Ga0208335_1026347 | Ga0208335_10263471 | F023136 | SDKNAIIKKDRNTIPKDLILDFKFKICFVETIKEANIQNCVKKTIGITNSGVTAKNLTKPGAWA |
Ga0208335_1028505 | Ga0208335_10285052 | F008648 | MKSFKGYLIERGTSLSDLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDSDGVKSISKLEGKKGQISAFFSMFSRYMEVGVATQGGVHAVLEMDADVLLSASGDVMSHLDQSGRRWTSISDLKETSRWTKFSAVEKDLEKMFDPLVKKYLKKGEFQENATVWELWRMA |
Ga0208335_1028993 | Ga0208335_10289931 | F041248 | MRSKQHGKRLRQEGAIERIETSILVHEEQLKSNKNDDEKKLLKKKIERAQATVENTKGNM |
Ga0208335_1030315 | Ga0208335_10303152 | F081452 | TLADAHLLSRLFMIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA |
Ga0208335_1031811 | Ga0208335_10318112 | F018739 | MTTQNYEPTLDLVKERMAKIDGLIEKFRDLPDVQQKLQGAKDALQESEEEIMNYFDLTDIVKRDLN |
Ga0208335_1038350 | Ga0208335_10383501 | F080654 | NSRLLKKKPGIQDSKKINAEILETVVADIISEETAESEPVGKTNLEERQDLWNKIQKFDPEASAMDYYDNGEWDLEKRRSDVKVLLEKKRFGRYI |
Ga0208335_1039163 | Ga0208335_10391632 | F003122 | MIELLIFGLVLLSVICLWLLIEGRKSPKFLIWFIPLLLILVSSTYMTYTAIQGYPKFETPKRGLYLKHYIDEPNWIYIWVIDKEQIPISYKIVYSREVHNALEGVKGKSEEGKFMVLGGEETEQAGMQGEEDGEHAGGHTIGGDISFYEWDYESSMPQKNPKE |
Ga0208335_1040164 | Ga0208335_10401642 | F050430 | MDNKLKENLMVGTKIVGMLFFLIVLITTLVWPGGVDTLANLFFTKE |
Ga0208335_1042757 | Ga0208335_10427571 | F002753 | NTVSDRFTPAAFDIESVKLTVSDRFTPAVFEIESVKLTDSDRFTPAVFDIESVNNTVSDRFTPVDFATESVKLTDSDRFTPSVFETESVKLTDSDRFTPSVFETESVKLTVSDRFTPAAFEIESVKLTVSDRFTPAVFDIESVNNTVSDRFTPAVFEIESVNDTDSDRFTGAVFEIESVKLTVSDRFTPAVFEIESVNNTVSDRFTPAV |
Ga0208335_1044173 | Ga0208335_10441731 | F089050 | MVELNHDVVSFNSDTLVKGGHGVLVSVYVTKVGSGSNKVEFKNGT |
Ga0208335_1044173 | Ga0208335_10441732 | F001625 | MALTISTSDWTNANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANSSSATNSKIFEFLVIGY |
Ga0208335_1045186 | Ga0208335_10451862 | F031665 | MEEQITQWVAPLVGLGITAIIVLWFKEAVGDVVASIRWKMKPGFEPGDVVYLDGEEATIVSIGFRETIFELNNGRGKVWRYIYNKRIPYHKLEKIISGMGDDK |
Ga0208335_1046307 | Ga0208335_10463071 | F019388 | MQSPNEQNPYLVETKNGKILKFNKIDADNEAATKQLDGDDVEVFHDGKLQYRLHGIEQGKLF |
Ga0208335_1046407 | Ga0208335_10464071 | F002753 | AALDIESVNDTDSDRFTPAALDIESVNDTDSDRFTPTVFEIESVNNTVSDRFTPAVFDVSSVNDIDSDRFTPAVFEIESVKLTDSERFTPAAFAIESVKLTDSERFTPAAFAIESVKLTVSVRFTPADFEIESANNTVSDRFTSAALDVSSVNNTVSDRFTPAALDVSSVNNTVSDRFTPADFEIESANNTVSDRFT |
Ga0208335_1047202 | Ga0208335_10472021 | F002753 | DTDSVRFTPAAFDIESVKLTVSDRFTPAAFDIESVKLAVSDRFTPAAFAIESVKITVSDRFTPAAFEIESVKLTVSDRFTPAVFEIESVKLTVSDRFTPAVFEIESVNDTDSDRFTPAVFEIESVKLTVSDRFTPAVFEIESVKLTVSDRFTPADFAIESVKLTVSDRFTPADFAIESVKLTVSDRFTPAVFEIE |
Ga0208335_1051092 | Ga0208335_10510921 | F016284 | MTSKTLKNMRKELLDKYSGKITGYEHLDDGTGDYARIVPKDFEKESEETSEKT |
Ga0208335_1052440 | Ga0208335_10524402 | F007773 | VSKNNIINLSDYRKEKEKETPQNPPQYIQDFEVGGYYIYPELGVMLHCMLITDSSHTHKNELMYIMEDQFGNIFSVPIDDPDSMMGWRLLEKEV |
Ga0208335_1053528 | Ga0208335_10535282 | F034700 | MAEEEPIVDFGFSAVTADEYERDNTDGENTGSGGSASPGALASMDAKIEQIMAALSSKSDAPPDDFGFSQEDK |
Ga0208335_1056227 | Ga0208335_10562272 | F045695 | MNSKREAFLRIWNKEAPKIRDTIKQKLLVRGIEPTQLNCYEYWMGYIKPWKNTRGDISHLNPYRNEGFMRSIGRTKYGTPYNMARRNKNKKR |
Ga0208335_1056905 | Ga0208335_10569051 | F006551 | FESLDRIVSTSAEEGTLGGSGSGHYDPWAANATIDRDSGTAFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYG |
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