NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025152

3300025152: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C2 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025152 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053054 | Gp0055686 | Ga0208373
Sample NameSoil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C2 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size736356823
Sequencing Scaffolds26
Novel Protein Genes26
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium1
All Organisms → Viruses → Predicted Viral1
Not Available7
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium1
All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_281
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Rifle, Colorado, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationRifle, Colorado, United States
CoordinatesLat. (o)39.534762Long. (o)-107.782602Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001849Metagenome / Metatranscriptome626Y
F009854Metagenome / Metatranscriptome312Y
F017668Metagenome239Y
F017852Metagenome / Metatranscriptome238Y
F021446Metagenome / Metatranscriptome219Y
F023250Metagenome / Metatranscriptome211N
F028847Metagenome190N
F030484Metagenome / Metatranscriptome185Y
F032702Metagenome179Y
F038735Metagenome / Metatranscriptome165Y
F042655Metagenome158Y
F046815Metagenome150Y
F050966Metagenome / Metatranscriptome144Y
F053724Metagenome140Y
F056321Metagenome / Metatranscriptome137N
F056711Metagenome / Metatranscriptome137Y
F057218Metagenome / Metatranscriptome136Y
F058725Metagenome / Metatranscriptome134N
F061534Metagenome / Metatranscriptome131N
F067453Metagenome125Y
F071201Metagenome122Y
F073159Metagenome / Metatranscriptome120Y
F076223Metagenome / Metatranscriptome118Y
F081864Metagenome114Y
F086459Metagenome110Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208373_1023500All Organisms → cellular organisms → Bacteria3351Open in IMG/M
Ga0208373_1024646All Organisms → cellular organisms → Bacteria → Proteobacteria3232Open in IMG/M
Ga0208373_1028657All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2903Open in IMG/M
Ga0208373_1030887All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2747Open in IMG/M
Ga0208373_1038342All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon2350Open in IMG/M
Ga0208373_1043757All Organisms → cellular organisms → Bacteria2142Open in IMG/M
Ga0208373_1046627All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2048Open in IMG/M
Ga0208373_1058113All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium1754Open in IMG/M
Ga0208373_1083279All Organisms → Viruses → Predicted Viral1375Open in IMG/M
Ga0208373_1101622Not Available1200Open in IMG/M
Ga0208373_1107183All Organisms → cellular organisms → Bacteria1158Open in IMG/M
Ga0208373_1126919Not Available1032Open in IMG/M
Ga0208373_1136897All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium980Open in IMG/M
Ga0208373_1136900All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium980Open in IMG/M
Ga0208373_1140041All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans966Open in IMG/M
Ga0208373_1160312All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans879Open in IMG/M
Ga0208373_1166382All Organisms → cellular organisms → Bacteria857Open in IMG/M
Ga0208373_1175719Not Available825Open in IMG/M
Ga0208373_1185467All Organisms → cellular organisms → Bacteria794Open in IMG/M
Ga0208373_1213617Not Available719Open in IMG/M
Ga0208373_1231169All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium680Open in IMG/M
Ga0208373_1234672All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28673Open in IMG/M
Ga0208373_1251193All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium641Open in IMG/M
Ga0208373_1306645Not Available550Open in IMG/M
Ga0208373_1320381Not Available531Open in IMG/M
Ga0208373_1322668Not Available528Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208373_1023500Ga0208373_10235008F056321MPHVETPATPAIIYVHMEFYRGIKAIATFLGVHERTAQAFLHDGKIPGKKDGTGTWVLTNLDYFTSLQR
Ga0208373_1024646Ga0208373_10246466F001849MDILLSPILANGLYIGGGAVGLILVIIVVVLLLRR
Ga0208373_1028657Ga0208373_10286572F056711MGRGTQSPCPLCFPLRIRMRKAFTALAAAAFALSIVAGGCAKDKSPSQLQAGKKGIAGTEKKAAPKPRAKLFTGTIEDMDEAAGTLTLKGPKGEMSFQARKKVKEQLGELEIGDKVIVKHDGKTALSIVKPRTSKTALAWYRNEETETVREEFH
Ga0208373_1030887Ga0208373_10308876F023250MRLRVLQIDSLVPPGWGFTGTEAKKPVGFCTIKEATEYAMQNLGLKQGEFKVLKGRGVDLDGNPKGKWILKVKTE
Ga0208373_1038342Ga0208373_10383424F017852MPTFLIISRHSPENCPMNNEKMKKLTLELPDKLGGLEKKHGIKRIGVWTVIPEHLLVWVYEAPTSEALQKFSMEPEMVKWMAWNTSEIKLAMSLEESMKLLK
Ga0208373_1043757Ga0208373_10437571F038735MKWFVNSMLGYWILLLTISMGAAGIIYEIWLKGKV
Ga0208373_1046627Ga0208373_10466273F030484MVDKEKEKVIDEAMSKMNQIRKAAGEFKENVAGLVKDVNVETKDWRFNVESHEEGVTIDVAVKLLISKKK
Ga0208373_1058113Ga0208373_10581133F009854MSENITRTELFAALQSLSQAMPEMRVGQLVAAVGELCTDLHGRGLWDATDTELLEAVWQFHRNFEAATIARREPRGQTESITP
Ga0208373_1083279Ga0208373_10832792F017668MNKGRLYEELIPIEQLSYKGYNTPELANAKIKQILDEIRKEMPPFTEKWVNTEHENPDWKATCEAMNERTIAREKWFIKWFGE
Ga0208373_1101622Ga0208373_11016223F021446MKTLSIALMATFMLVLAATSTGQAQSAAEDIYNDPSPGGKYVYRGCNLAQVIFIRGDKLSEINELTLIIEVQAGQNSHTTRLTFPILAKRQEGNKLILDYQWPPAGDTYEATIIGGSLINRKTKGYLAGIREELFTRE
Ga0208373_1107183Ga0208373_11071831F058725MGERLKAPFISHVGGGGVLTFVGTADDQAVYWFLEAIDPRPGEGPWPPVGRLQRPRYRVSPIRFGTGFYYGIRIPYGGTVRWHSVNEVNSGLTLTDASKHATNIYLAPKRPPLIRYGMHYKFGEVKYGEGS
Ga0208373_1126919Ga0208373_11269192F071201MPVPKPKTDESEQEYISRSQMFMHKENESKPQSEKPSNEQISAICIQLGAKTKFKID
Ga0208373_1136897Ga0208373_11368972F061534MNNYGHIPPELMERVRGMFLTLFGGKEKLDCWLTRIADELADTGNPANRPIRLDPSLIPEEFQSVMHRPKEVVDLIVERLDSLSVFGYTAKIIKQGEVSLAIVSDQASGHVIEEAAGPEPDTLIRSLVEKYGHNLEVVK
Ga0208373_1136900Ga0208373_11369002F081864VGNETHFIVGQYRYARQDAFKIAQTRGEERVIVLPGKELVPQGGNPERPEKLNQEQINNIKERLMAQAETWTFRKGKRAPRVRTVIPVKGMKAAEVMVIFDIQSKRTAHAIVKRGFYIVDYTKPAMCPGEIDMGDAYRIANWWLYKKLGGRLPHWAEPDDMIQDAVTRLIERAGDPRMKEPSYRFYVVRGAMTEFLRRNQKHEHEDEEKINAPGSRWGTWDRSYRATDMMCRMIEAKGAYPMDLAA
Ga0208373_1140041Ga0208373_11400411F076223MRQEIHQSAIWGCRQRGAILMAGLAVMFMVSMAPVPIEAASQVTEIMLSDQSDAKGVVAQHQSKFSTAVGEIFGTALIAGAKKGQAVTTELFYVTRNLSILSSTDDLPDDGEVTLTFAFPKPDKGWPPGDYKLVISIAGGGTKTMTFQVK
Ga0208373_1160312Ga0208373_11603121F076223MRREIHQSAIKGCRQRGGMFMAVLAVMFIVSMAPAPLQAAGQVAEIMLNDQADAKGVVAQHQSKFSTSVGEIFGTALIAGAKKGQAVTTELFYVTRDLSILSSTDDLPNDGEVTLTFAFPKPDKGWPPGDYKLVISLAGGAS
Ga0208373_1166382Ga0208373_11663821F046815MQMADFLIPHIQYVTIPPHPDRSTPDNLFRLLDSLEAFERDRMLVWMYLAFLEPPEKQGTAETEEEKLELRYNRFEQKFRHAAMGVFEPFLVHATVTYTLACLRESGDKAGIDALRHKCQSALSLLRRRIAEGTLSPEAGESMIGNLEERINNLPAEVDLARQRYETFCEKVAKEILR
Ga0208373_1175719Ga0208373_11757192F053724MREIRVLVRLQVDECEPDATIDREIMEDAAVEAVENAMRFAYDNGFSHTYADELSIGFVDAVLYEEDLDDEDRDEE
Ga0208373_1185467Ga0208373_11854672F073159MARRKKHAVRSGAGSMCNICGRNCGKGGALRTHIEGAHKVSYDAYKTCFYGDVKTQIADTWDDSVKTHGGQTVITHVLVRRFIGNPGERGVRRKVP
Ga0208373_1213617Ga0208373_12136172F028847MQEERRLFNLRELEKMLKSHYKKQNSDLEISFRDTKFVTYVIHEKGKPWGRSLTTEESFTEIAKILFPAEDVRIVRMQSDPPNVELLIEKS
Ga0208373_1231169Ga0208373_12311691F032702LEKIHSLVVRVVNQSNKPIPNVNVKVFRLEKESISPQQWAENLKNGAPFKTLVISMNTNNHGTVTAELPEGAYEAKVEGYGFNKVCELTQNADVLFIEPKKCWWQS
Ga0208373_1234672Ga0208373_12346721F042655VFTLKTFELTIPQEYLDHIEKEIKRPKRPNTELLELWLERELSIENEGTYGNLPTDESHVTVEVLPNGNYKVIISNVCFGMIVSHVQPEPHGHRMHNEDVFHCWLDIKSNKLHVEEHIEVKEII
Ga0208373_1251193Ga0208373_12511932F057218MTYASALFSPRLDPVLNRGKRDEDPVVAPQVPTGSPVGQTVFHHQPDRRLH
Ga0208373_1306645Ga0208373_13066451F067453PGLPWGGPLPGGGYDGKTKRLDRAVQRFAEWLHRRIAGPVQVRFNSHRLSGGAYVYPDAAPDARITFDTPEIGLGARLITPASVQRRRDRAWNKGEGSSLPALEWENCWTESTPLSYDVLIYPQYLRDSGNLGEHKPGDRFGYWSVATPQEAYRLVRRLVNFPVAGATR
Ga0208373_1320381Ga0208373_13203812F086459MVDPLTARNDAVIYAKDRILAELDSAGAQLASLAADLKASRAVLQARLKRPPPFMPLEEYDCHFANAFTHIERAKMAVRAMHPVCHQADFLKRKTEKKGHRQ
Ga0208373_1322668Ga0208373_13226681F050966MRENLMSGSMWQGMKTRHGDGTEALSEEMESNGSATP
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