NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025094

3300025094: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC8 2012 metaG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025094 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111485 | Gp0115600 | Ga0209478
Sample NameHot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC8 2012 metaG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size215279623
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomehot springsediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCanada: British Columbia
CoordinatesLat. (o)49.9543Long. (o)-116.5155Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029120Metagenome / Metatranscriptome189Y
F046219Metagenome151Y
F052227Metagenome / Metatranscriptome143Y
F081382Metagenome / Metatranscriptome114N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209478_1005912All Organisms → cellular organisms → Bacteria4326Open in IMG/M
Ga0209478_1007348All Organisms → cellular organisms → Bacteria3412Open in IMG/M
Ga0209478_1030960All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium864Open in IMG/M
Ga0209478_1032778All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium823Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209478_1005912Ga0209478_10059124F081382MSKHGEVLEIAILPAGGRAKQVVQRALGKRRAHIRVHNLCDIADASAPMLALIDGSALQGGESVLAEVITLLQQSAWRDAPIVILDDSGADLRRGFAAGYAARIRLDSSPEAIAQLIDRMMHTAV
Ga0209478_1007348Ga0209478_10073485F052227PDPAVLRLLRERGVEVEVLPTEQAVRRYGELDPARTAAALHLTC
Ga0209478_1030960Ga0209478_10309602F029120SKAVEGRFVPVYRDHTKNEFWEKSKFAEMKRLAEVGRVRNWPAAPQPWLAEVTDAKYTLSDMMNKIINEGMRIEEAQEWAQREMMEVYNKFRKK
Ga0209478_1032778Ga0209478_10327781F046219ALDLRAAVKLGIQITLDEIRADEFRAMVVLEEERDALDREQMNAHGR

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