NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025064

3300025064: Marine viral communities from Cariaco Basin, Caribbean Sea - 25B_WHOI_OMZ_CsCl (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025064 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067852 | Gp0122834 | Ga0208301
Sample NameMarine viral communities from Cariaco Basin, Caribbean Sea - 25B_WHOI_OMZ_CsCl (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size101667092
Sequencing Scaffolds23
Novel Protein Genes27
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available14
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C1831

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)N/ADepth (m)247
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007005Metagenome360Y
F011351Metagenome292Y
F011408Metagenome / Metatranscriptome291Y
F011854Metagenome286Y
F012404Metagenome281Y
F015790Metagenome / Metatranscriptome252Y
F019633Metagenome228Y
F021867Metagenome217N
F025388Metagenome / Metatranscriptome202N
F028360Metagenome192Y
F032241Metagenome180N
F038717Metagenome165Y
F040680Metagenome / Metatranscriptome161N
F043977Metagenome155Y
F049030Metagenome / Metatranscriptome147Y
F059057Metagenome / Metatranscriptome134Y
F065674Metagenome127N
F076491Metagenome118Y
F077964Metagenome117Y
F087942Metagenome110N
F092198Metagenome / Metatranscriptome107N
F093730Metagenome106Y
F093983Metagenome / Metatranscriptome106Y
F099868Metagenome103N
F105342Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208301_1003831Not Available2703Open in IMG/M
Ga0208301_1005255Not Available2202Open in IMG/M
Ga0208301_1005515All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium2129Open in IMG/M
Ga0208301_1006143All Organisms → Viruses → Predicted Viral1992Open in IMG/M
Ga0208301_1012477Not Available1241Open in IMG/M
Ga0208301_1014864All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.1105Open in IMG/M
Ga0208301_1016178All Organisms → cellular organisms → Bacteria1047Open in IMG/M
Ga0208301_1017644All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.990Open in IMG/M
Ga0208301_1020722All Organisms → cellular organisms → Bacteria893Open in IMG/M
Ga0208301_1021246Not Available878Open in IMG/M
Ga0208301_1021299All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon877Open in IMG/M
Ga0208301_1026583Not Available756Open in IMG/M
Ga0208301_1026836Not Available751Open in IMG/M
Ga0208301_1027169Not Available745Open in IMG/M
Ga0208301_1031968Not Available667Open in IMG/M
Ga0208301_1033570Not Available647Open in IMG/M
Ga0208301_1033806Not Available644Open in IMG/M
Ga0208301_1039463All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.582Open in IMG/M
Ga0208301_1039863Not Available578Open in IMG/M
Ga0208301_1043466All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183547Open in IMG/M
Ga0208301_1043594Not Available546Open in IMG/M
Ga0208301_1045260Not Available532Open in IMG/M
Ga0208301_1048307Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208301_1003831Ga0208301_10038311F025388MQAALRRVGLNTSASTFKDGARSYLNMVGKDIQNREKWNWMFKSSTFNTTNGTQTYSLASDAATPLSFRNTTENHVIIIMSTQDLDAADPDHSISGDPRWAVIDGVDSSGYVQVSLYPKPDSTDTIAYRYYRLVPDFVEANDNSSLDGYYSPIIQPALVYGIAALYKQEKGDDEGAMADQREMERVIAVASRQNANVQGNRTYRMRRSDDRASGQFSYYPQEGSLS
Ga0208301_1005255Ga0208301_10052552F049030MPKNRIPLYGQIKEGPELARKVGKIIATDGATAVSLAPQDSGITVHILGGTNGAAAVSLPSLASASSDGLEYTFLLKAANGTGDLDIDAEDGKDYFIGSIVSVEGTNDVGIDFNGSSHDQLTLAASKGAAGDQVHIQSCGGLWYVRGVTNDQDGWAVGTDSANSSPPTDSNNPL
Ga0208301_1005515Ga0208301_10055152F019633MNFLLKLLPADKRSLLELALRITASLDTTAERKRVADYGVEMLKDGKVSVGEWAKFGSKLGILKGKH
Ga0208301_1006143Ga0208301_10061431F021867MKKNENVDWDKVNRGKVRYGFALELYKKGGILKPSELGRIEAFVGYVMDGVEDDSTVIEAPVSRLMPSEECKQVIRTETEGSNAFVKAMVHIDSEGLKEKDLDRVLSALDNGKITMDNLQESLDRIASIKKSYK
Ga0208301_1012477Ga0208301_10124773F007005MDKTILVVECQDYTWGKNYSIKKHADTLDKASEYLVALKNLNDSDRVTYELFNRFGQFEVDEIKKVEPKESEETDEIRF
Ga0208301_1014864Ga0208301_10148644F021867LKPSELGRIEAFVGYVMDGVENDSTVIEAPVSRLMPSEECKQVIKTETEGSKAFVKAMVHIDSEGLKEKDLDRVLSALDNGKITMDNLQDSLDRIASIKKSYK
Ga0208301_1016178Ga0208301_10161781F105342LLRILGFHKFEVFGFDSCIMDHHHAYEQPENDKEQEIDLVVGGKQFRCTVAHYHQAKEFIQLVGATGSNYDLIVHGDGLISHIIKNPESLKEAA
Ga0208301_1017228Ga0208301_10172283F065674MHGRQKLNTAVLQDLADRSVWDTRQRMFYEMRHHGLRRKNKPWPGASDVHFPLVDTTISELKPAYFQQLFATDLIAQFIPTSPQVAEYTTAAAQWFDHRVKQKTNLETEVLSAVDAMLMCGTGVLKVLWDYSSKRLKYYTVDPQHIVVPAWTRDLADADRICHISVYSIESYKRQKHLKQDKAIL
Ga0208301_1017644Ga0208301_10176442F099868EIDQAKSLIEAFSQNQLHDLLPFLRIGQKGAKKNYRLCIDCPIDSKARIANKLEDSLGLTFKWVEYDTSKPVPEATGMTPEFKDYAKKVAKAK
Ga0208301_1020722Ga0208301_10207222F011854TRAVLTGTSFADNTTGAITAQMVRQFTESGMGGFATIYSPSGTPASQAVASGATATIDWNADSVGANGPDDTGTVSSTTVGADADFANDRIRIYDKGWFMINLGISFAQTGSDTVIWTFRIGHDIDGAGVTYPGYDCAVQKVAATLDNMASASGIIDTTGHTTYTDVVAQVKNGHGSNSENFQMHYGQLSVFRVG
Ga0208301_1021246Ga0208301_10212462F076491MKIGDLITFKIDYDSECIEDIGIVTKIEPTLGYAIIAWPWGSERHRTCGLQVLSENGEQK
Ga0208301_1021299Ga0208301_10212991F087942MRFETGETVTVMAGSVLSPYYLQGESGMVLEVSGSSDYVPEHYTIEFETGTHILYGTELRREVNEQDLTYELK
Ga0208301_1026583Ga0208301_10265831F012404MTDMAQNEGIALNVELVGIKNLKTTHTWRLEFDVYEIDSPKVKDLMDKVDKPLVMALVDN
Ga0208301_1026836Ga0208301_10268361F011854MGNATPTALRKTRAVLTGTSFADNTTGAITAQMVRQFTESGMGGFATIYSPAGTPASQAVASGATATIDWNADSVGANGPDDTGTVSSTTVGSDADFANDRIRIYDKGWFMVNLGVSFAQTGTDTVIWTFRIATQADGGSVTYPGYDAAVQKVAATLDNMASASGIIDTTG
Ga0208301_1026836Ga0208301_10268362F038717VPSVGDLVKGETSGAIGSVLNVSVEDITGDSAAGTFSTSDAEGYVYFTIVSGTLEDGETLFFLNENSAFGSAFNVEYK
Ga0208301_1027169Ga0208301_10271692F011408MSIEYYDPTDVNAEELIKRVRIGRSTEELIRTPTGSSLVSRATQDYREGIEALQKMAMQEWVGSSEEELQQYRKISNNLATPLKLLHWLDAILTDGENAESIARHRDTGEI
Ga0208301_1031968Ga0208301_10319683F028360MLKVEIKDKGENVLTVDLSDEFVQWFKVTHNLKRWAPKQFKNWLVKVLEGDTR
Ga0208301_1033570Ga0208301_10335701F043977MAVSATIVTMGNLTATGVYLRISDLTVKKIIEGDESGKWQMVYGVDCYVNAEERAKDSPEKLVAPSVDRFKVVSDDEPSDPMATAYTDLKAQAAVTDATDLV
Ga0208301_1033806Ga0208301_10338062F015790YIRIHCRTNTAMLGPDPSIYTHVWNMKEIDTKLLPFLEQLGGKKIQKTRLREHEPPTITKEQEAKAREVMAIDYQNGWCKELISSRI
Ga0208301_1037031Ga0208301_10370311F032241VLTYKVGGYTPSEIEKATNDEALRRGLTDAYLESEKQIGANVPRAIKYDLKTIETEGNHSPEEKRLLGKQFLLDFINQGSRTRDTESHFLLYQQKATKFLREVQHWNLSGLKTKEVSVLVGLIENVYNYFKEERRLNGQMFPRKAGENIFGAKETGRDSD
Ga0208301_1039463Ga0208301_10394632F011351KYIESIAKVIIPSIDHLQLVEYKDKELDFAYGMQEHHTSFRRMFKQIIRIIWR
Ga0208301_1039863Ga0208301_10398631F093983VTPSYDFGGTYTPKTVPVSSAYTIDVAADQWSESDISNSSTGVTVVASERVRINGIGTNMGFIISNSATYDKPITLQGGIVEYSNRGVRR
Ga0208301_1042751Ga0208301_10427511F040680MQTDVKQTIAVAATAQLQKYVGTVATNITKARIMAITAQASAANASVKIYDTVGATTASKLVAELKFGTADGEWTHFYVPGQGIYCGTG
Ga0208301_1043466Ga0208301_10434662F093730VTVFVRCENDGRWRLWVRSAAGEAPAGVRLNRGGLFPYETLYDHQDHAEATFQAGRLQEYIEDRERVLMANRKRKNRWR
Ga0208301_1043594Ga0208301_10435942F059057MAQGLNAYTASEGINVQLGQAGWDIVTNATVNAHTYVAITVLVGTEVISGNTASGTVTATSIDTDLGDSLSSLEVPEGC
Ga0208301_1045260Ga0208301_10452601F092198VTGGGVHAVIDAGSKESGNCTWKIPAGHTGYVHGFWYDVDAVGAGQGTAEIALQVAHAESSGVANSESWRTVAKVTVVENDNDVVAATGGNSNNMGSFSFPGNVPFVVPAKAMVRLAGKAHSTAVAATCGFSMSVQGSGSGTTVTSS
Ga0208301_1048307Ga0208301_10483072F077964EIQKVPGGGGEAETFYQYNYVTIKGKPTKLKVQQAIAEASSSDDTAIVEEVAANRTIALERLANISAMTYAQINTHVENTFGNLSAAQKASLKKLYKAVLALIKQMDLE
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