NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023669

3300023669: Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA5 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300023669 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128948 | Gp0290757 | Ga0247539
Sample NameMetatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA5 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5907544
Sequencing Scaffolds40
Novel Protein Genes45
Associated Families43

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 221
Not Available39

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000218Metagenome / Metatranscriptome1552Y
F000396Metagenome / Metatranscriptome1185Y
F004183Metagenome / Metatranscriptome449Y
F004473Metagenome / Metatranscriptome436Y
F006559Metagenome / Metatranscriptome370Y
F007847Metagenome / Metatranscriptome343Y
F009606Metagenome / Metatranscriptome315Y
F011079Metagenome / Metatranscriptome295Y
F012750Metagenome / Metatranscriptome277Y
F018180Metagenome / Metatranscriptome236Y
F018868Metagenome / Metatranscriptome232Y
F021919Metagenome / Metatranscriptome216Y
F023505Metagenome / Metatranscriptome209Y
F024939Metagenome / Metatranscriptome203N
F025284Metagenome / Metatranscriptome202Y
F025423Metagenome / Metatranscriptome201Y
F026569Metagenome / Metatranscriptome197Y
F029445Metagenome / Metatranscriptome188Y
F030619Metagenome / Metatranscriptome184Y
F030627Metagenome / Metatranscriptome184Y
F031388Metagenome / Metatranscriptome182Y
F031504Metagenome / Metatranscriptome182Y
F033813Metagenome / Metatranscriptome176Y
F036049Metagenome / Metatranscriptome170Y
F036126Metagenome / Metatranscriptome170Y
F036944Metagenome / Metatranscriptome169Y
F038498Metagenome / Metatranscriptome165Y
F040634Metagenome / Metatranscriptome161N
F044295Metagenome / Metatranscriptome154Y
F058155Metagenome / Metatranscriptome135Y
F058585Metagenome / Metatranscriptome134N
F061605Metagenome / Metatranscriptome131N
F062325Metagenome / Metatranscriptome130Y
F062326Metagenome / Metatranscriptome130Y
F063428Metagenome / Metatranscriptome129Y
F066368Metagenome / Metatranscriptome126Y
F067292Metagenome / Metatranscriptome125N
F074242Metagenome / Metatranscriptome119N
F074360Metagenome / Metatranscriptome119Y
F079408Metagenome / Metatranscriptome115N
F079435Metagenome / Metatranscriptome115N
F086425Metagenome / Metatranscriptome110Y
F092084Metagenome / Metatranscriptome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247539_100075All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 222014Open in IMG/M
Ga0247539_100320Not Available1127Open in IMG/M
Ga0247539_100444Not Available978Open in IMG/M
Ga0247539_100456Not Available974Open in IMG/M
Ga0247539_100491Not Available952Open in IMG/M
Ga0247539_100525Not Available929Open in IMG/M
Ga0247539_100561Not Available905Open in IMG/M
Ga0247539_100646Not Available855Open in IMG/M
Ga0247539_100679Not Available843Open in IMG/M
Ga0247539_100854Not Available798Open in IMG/M
Ga0247539_100855Not Available797Open in IMG/M
Ga0247539_100894Not Available784Open in IMG/M
Ga0247539_100928Not Available776Open in IMG/M
Ga0247539_101173Not Available718Open in IMG/M
Ga0247539_101232Not Available704Open in IMG/M
Ga0247539_101321Not Available687Open in IMG/M
Ga0247539_101406Not Available672Open in IMG/M
Ga0247539_101541Not Available651Open in IMG/M
Ga0247539_101573Not Available647Open in IMG/M
Ga0247539_101660Not Available634Open in IMG/M
Ga0247539_101743Not Available621Open in IMG/M
Ga0247539_102004Not Available592Open in IMG/M
Ga0247539_102063Not Available587Open in IMG/M
Ga0247539_102075Not Available587Open in IMG/M
Ga0247539_102095Not Available585Open in IMG/M
Ga0247539_102096Not Available585Open in IMG/M
Ga0247539_102225Not Available575Open in IMG/M
Ga0247539_102247Not Available573Open in IMG/M
Ga0247539_102294Not Available569Open in IMG/M
Ga0247539_102355Not Available564Open in IMG/M
Ga0247539_102378Not Available562Open in IMG/M
Ga0247539_102425Not Available557Open in IMG/M
Ga0247539_102559Not Available547Open in IMG/M
Ga0247539_102633Not Available542Open in IMG/M
Ga0247539_102717Not Available536Open in IMG/M
Ga0247539_103002Not Available518Open in IMG/M
Ga0247539_103114Not Available511Open in IMG/M
Ga0247539_103166Not Available508Open in IMG/M
Ga0247539_103234Not Available504Open in IMG/M
Ga0247539_103318Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247539_100075Ga0247539_1000751F030619AFTVKELKVLCHNVRGSALHSKRWKNVPCNIRKNVVDTLCHLAVRQPENGFAFTRLSRSLPEPPQRECVRHLQAAKLMASAEFPTSVAALDSLRSFVALTPGVSGNGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLALRGLIRLADLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHAWTACEIFALPRSHGEDKMTLFYPPSIPPPTLRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247539_100320Ga0247539_1003201F074242VLGGGGRRSSLQPPAFIPTLSLSHKFRYENGGNSGTFNITRGNLLNQILIATSTTTTVRIIEAIRLKSVEVWGSPPALGSAPIDIQVEWLGENSPSTVVSDTSMGIRPSHVATSPPPSSSNKWWSISGTSEADVLFSITLPTESVIDVTCELRLVEKETPTAGDFPVAATLGQVYGDYLDGIASGKLVPVGFTVLP
Ga0247539_100444Ga0247539_1004441F029445IVTAEMSRTTKPMRKQKGQRQRGVTAFSIEIAGDQIVKRMSYPSYALSTGAGTAIAVYPIGSGTVQSAPATEWASFAARYQQYRVRAIRVRGKAVNPVQTATLTHGVLFRGDYIGAAIPASAAQVLSDENVQECTTCKDFSDVVTWQKNPNAKLWNPTTSPIPVANTFAWAAASNATPVLTTATTYYALVTEWEVEFRGSQ
Ga0247539_100448Ga0247539_1004481F000218MDSVMALGGLLVPIVALIVGGAVAITQLILRHQERLAKIERGIDPDASGPQQR
Ga0247539_100456Ga0247539_1004561F025284MFKNKGNKKGQGRRKVGPRRGGREMIPHPPQLPSYGITRDVRLRFQATAAALTNITFQNLLDTVLVATSATTAADLFEAVRVNSVELWAIAALGTPATVILAFDGMTVGAAGDQKTHTDTSMGVEPAHVRAQPDKLTQAGQFQTSSANVAFILDVPAGTVIDVSMTLRQPVFGTVVASQNVLVGATAGAVVYRGLDGKTTALTNFPVLGAASVA
Ga0247539_100491Ga0247539_1004912F058585RFNLDHSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASTPCTPARPVANLPARIGFVSFGSTGCKPPTCVECSALPLVLRRSIWLAPDDPGFIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLTRLAASSGLRLVLPLPLGWLRFQFAPAASPSVLTGREPLGLRLAAPSPAEPLMHSLFPPNLASTAKPSMSTQFPPALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVRVYGHRSGSHRLFAP
Ga0247539_100525Ga0247539_1005251F036944MTCVELQESLAEIDDGSGLEQKRHLQTCLACSALLKELNLIVEAASQLQACDEPSPRVWNSIEIALR
Ga0247539_100561Ga0247539_1005611F006559IDWVISLAGQPERQPNLKKPTALRGAVGVWDCENSDRIKGL
Ga0247539_100646Ga0247539_1006461F024939PNTSRVAGPRTLRCAPVADYSSLDTWLSPLSADCSAFRFVHPMLPTDLTRRSTLDARRRSRIAPLPAICVRVAHRIAPCSTLRALHRSRIAPLSMLVRRASCELLRSPRFAPCRLSRISPPGLLRSDCSSFGDLMLRDGLRIAPYADTSHPCVDHGSLRVQHFKLRPVHRLLCARRLAFDSDRGLLRCLHLAPWCCPRIAPCATLGVLRLTRLAPHSTLIAPHQIWITPYPTLDTLLRLRIAPHSSLSAPC
Ga0247539_100679Ga0247539_1006791F031504MPRASVIRRWGLTTRGRDYQLTPAFPRLPGIIPEGPASGPPLARQPLRKPS
Ga0247539_100854Ga0247539_1008541F067292ESVVQPLLRPLATPAADPQLALATASTGCAGFKPPTCVGCSTSGSTGGQPSDSDRCSVIRLDRWQAPGFHRLLCASVRPGADLPTCVGVLPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFGLRLLLLRLLQLALGVARLPHRRRTSDSHRLLRRPASPVSTHSTCVECSYFRLGLRCTPCFDWTLHRRTSRR
Ga0247539_100855Ga0247539_1008551F023505DVGGGRKKAASFPEIIPGDWAKVESGWLAQPLEDRFARSGNRRHNSPVPLSAFARRQ
Ga0247539_100873Ga0247539_1008731F018180MPAVFFSTSPPFRKVNEACLLSDPSRLERLFCRAFQRLFILRLLLSELPLSSAPCWRTVATFYPLGNCDSLKPETVLSYLTRLGAVSFRTSSLSPFFAFTDSARTLPEELVNSASANMPFSFF
Ga0247539_100894Ga0247539_1008941F033813KELGAGGGRKKIAGIPRIIPGDWGKAESGWLAQPL
Ga0247539_100928Ga0247539_1009281F009606IMSKEQVSKNNDNGRGPNVVRTKAKPKVNPVTGANFEYVSEPRIGDSFVVVMGGPGGVNSFTFHHPIGVTEVDDEDWVCTPTGDIPSLLARRDDPDEADRKARRDKHRLDLVVVANLLEKADDEGLLVYPGTDISRQDALAAARAAAKDAVKAEKGKVPPDLYIRFLPQPVQEAETLVRKKLASRETIQKAETKFPSSGFRTRGGPLADRDQVSVDYLSGLSRPQALDAVTKRVFGLDDEEE
Ga0247539_101173Ga0247539_1011732F004473MKPVERFDPEGWKQPEGEWRSDDIATASEIGADNGSRVKNSPGFGFETKLSGGAFDRTGSQRIAGVETKGQGGSVDLVMVAKASLRASERPFRVSGSGRMHVC
Ga0247539_101232Ga0247539_1012321F018868MRSKTSHAAKSGVGEHKARESESAQHCAIGKECVAST
Ga0247539_101237Ga0247539_1012371F007847MPHSKFSDRKALDGPAMRPKTPLAVENGVGKLAANARQMS
Ga0247539_101321Ga0247539_1013211F036049QARLMVVTEDRRRSPMFALGTLLLATMLVGGPLWGPSYAVRIACAVETDAACPALGPGNSTDFIVRNFTNVGLESLEIPAAQLLPPTDSAYEMAVHHAWIPWFETHWRLLDNQVRLTHETCAGEVAQLYLSPALTDLDWLRVRLWQVPSLQPQRCAIAPTVCLTDC
Ga0247539_101406Ga0247539_1014061F012750MEASEREQPLQARERPLRKTGSIEETDCGGPEGVDPEGEKSNLGERNGETPGATQCGALYRACRWRARLGIGDEI
Ga0247539_101541Ga0247539_1015411F066368AFQPASTSGCATSLRTRPRHACDFLSRLNHLAPGQPPFLTARSPDATGLASSLRDCFFSQSSDAIFSTASLRKFFHAACQAFVAFPLHAPALFAFQRFSFGELTFYFEFRRATHTVLIRSSNQSLFWQLRFVQTRNLPELLHSTRSGFSSPLAADPSFAFGARERTRGIGEFCLPSPTFRPV
Ga0247539_101573Ga0247539_1015731F000396VLLAEQLAHQRSVRPGPISQLNSPPACNGTELCPQDCRAPSLQLPAAFFRTLRINAYGLTCQLSWLEPVSRSGLSLSRNDCLSPGHHFEVEAPDLLLQHPTVSSSCPFRFRFPSALQFALARARSIPKSRCLTPARHSRPFLGSPLPFGAFRALKDQSVQPDSRLGSSPSERSRLPITPRHRIHFLVGLDTGSPLQAR
Ga0247539_101660Ga0247539_1016601F063428EKLRLDVSRIIPGDRGKVGLGWLARLLLNQPKGGTAEAKFTGSSGAFARAKCE
Ga0247539_101743Ga0247539_1017431F025423SAPRQPFWWLPLQVPSDPISSLANHGNASALSTAFRSAVRLACLLPGNRFGGHRFNAFRRAAAYLSETEPSARNGLSLARNGSRFHGLHSGVKGPSLLLRCLACRFPCPFGHSAPLPKLVCPNSRRFHASGPLHFRPQTHPAALPISTPLREFSLPRDQSVQWASPPVGPPSESARSPLAPRSRFYF
Ga0247539_102004Ga0247539_1020041F011079LREKRRDPWLWANASSKAMADPKPVVKTRENNRRRVLTWFAGRWRNHQLKRAEKPHSKSARRKMPDGPATRPKTPLAVENGVGKPAAPEKGAPNDGSGKRDWRTP
Ga0247539_102063Ga0247539_1020631F074360KVPRKQVTKPVRAKQPLFVAGERPLPNKVIPGMANIGKQGIANVKIPIPAPSEDYEDGRVVGWVVQARFVVKDKCMFVSDSASSATATVKVPVAHRTADIKLRVMGEAEENYPVIFQLTPYFVQEMAFGLGGAAFE
Ga0247539_102075Ga0247539_1020751F031388VIRSLTLEIETGGGEREEIGRIRKVSRKAAESVERFDPEGYKSPGGEWRQRKQLSGPARRAATGLKRRSCPQLGQTSEGRGAEGGPGGEPSWEVAKWQVRTVDPGMEASEREQPLRARERPLRATGSVEKRDAVRSGGIDPGAEKSALEERNDEALSAS
Ga0247539_102095Ga0247539_1020951F040634MHGTEHRISDCRAYSPQAPRLLAYPASASSPLDAPQLIFPKRDRSLVAAFPSPRTPSAYADSTLRSMVLACHFAHLLAVRPARSTFRLPRQGLVGPSFRRHPRLKPVAFCAGPLCRLCRQIPLPFRSFRSLRIKALPGFATVRSAFRNCPIFVRSPQPFLLKFGCGS
Ga0247539_102096Ga0247539_1020961F086425MASACTDSVPGSMVLACYFAHSPAGLLTRSAFRLRRQSLVSPNVQLHPRLKPVAISTGLLCRLCRLPSLPFRNFRSLGINAPTGFATIRSAFRNCPIFVRSPQPFVLPFRLRIIVPDPLHSRRLAV
Ga0247539_102225Ga0247539_1022251F021919VTRYRSETPRRHATAQSLAARIAGCFPFRSPQPFLEGYRSMLPGSPASFPSWNWHLEAAFHSPETTARFRATISRSKLPTCYFDTLPFVRPARSDFDSLTRSGSPRYAPDRYRNPVARLALSTSSPSSNLHSPLGPFGPFRIKAFDPIPGRKVRFPSAPDCLLLPSFNSILLASMPDHRSRLAKRSVACCS
Ga0247539_102247Ga0247539_1022471F062325SDPISSLAHHGHATVLSIALRTAVRTACLLPGNRFSSYRFNAFRRAAADPKLDRSLVTAFPSPATTPAFADSIPGSMVLACYFAVSITG
Ga0247539_102294Ga0247539_1022941F026569MHGTEHRVPERRALRLSAPRKPVYPASASSLPSAPQPLILSKTGPFARNGLSLTREGLRLREFRPGVEGPGLPLRSLACRSSCPFGFSAPPPVAGSPQRPAASTPQARCIPYRPALPAVLPACAPLWEFSLPWDQRTGKLRNRSVRLPALPDLRSLPAAFPLKDSATDHRSRSATF
Ga0247539_102355Ga0247539_1023552F004473LNALIRRVEKPQGEWRSDGITSAPEIGADNGSEVTNSPGFGFETELSGGAFGRTGSQRNTGAEAKEQGRSVDPVMVAKASLRASERPFRVSGSGRMRVLRTRFSH
Ga0247539_102378Ga0247539_1023781F062326VHGTIERTTGMLGVRSATGRSGFVVFRSPATPFGTRRVSAKNASSRLASRRSRKLGTAFRSPVTMLSPPLRGQRSRPAPSLPRRCFFAYPLDQKLLRSVRFRSRNRANSSPSTRCPRRSPALLRCHPVSTPLRAFPPSGSKRSTGFIATSSPRLTPDLSFAPRSALFRFRPGSTLETRFRPAQLSF
Ga0247539_102425Ga0247539_1024251F038498VRRVNAATCMKLKSLRRNRKLETAFHSPATTFARHYEVNVPDLPLRFHAEDLTKPVRSRTPSLRSVFEAVPGRILRPLPVALRRSPALLRFHSISTPLQAYLQSPPDQSVQPSSPRGSLSDKTSACPLLPSALSFRMSPRITAFDALLSRPAN
Ga0247539_102559Ga0247539_1025591F030627RLRYRADSVATLLPTRARLGPLSMRHFLAKTSGRRFCRDRIRRGNHPTGWHGGFPTGRPWDFAAERRKIAPTDEDRRSLPALPFPGPAPRIGLASSAVTGSIDLPWVQCTGVEGLSPRDPDASLAATLTPIAHPAFWRRLVRGGLVAGRRLPPCPRLIASHGLL
Ga0247539_102633Ga0247539_1026331F079408MPVRPFGSAAGIGLPQSPQLPRFRPVAFPAGELIRLLSPSPLPSGNFCSLGIKAFNGRRRRPVRLPISPDFRLLPATVLFLEEGYGS
Ga0247539_102633Ga0247539_1026332F062325VPSDPISSLAHHGHATVLSIAFPITVRFACLLPGDLFGGYRFKAFKRAAVSYPKRDRSLVTAFPSPATASAFADSIPGSMVPACYFAVSFTG
Ga0247539_102717Ga0247539_1027171F004183ERLRGANEDRAIPEGGPNGCEAMQCFDPEGAKTPEGERNLVAQLAKRAGTECNGLEAWMPPETGANQTVAGEPKSRTGRTNGKRVSEVEGRDH
Ga0247539_103002Ga0247539_1030021F061605MHGTELCSQIRRAFFLYAPRFLLSKAADRCFQARLRASLTGADISKRPFALPKRLPVSEPPFRGQRSRPTPSMPCRSLALPVRLSAPPRAPVRPGTREITAKNPLPDSRSALPTVSRISTPLQGLSNPSGSKRSIRFPIWKLTFRIAPDCPSLPGFGSI
Ga0247539_103114Ga0247539_1031141F044295GCGERAKIGRIRKADRTAATPIERFDPEGAKIPGGEWRWGEQPDEFIGGSATGLKRGSGGDWGKPIPAVELKDRTGIETGDRDSEVAGRDH
Ga0247539_103166Ga0247539_1031661F036126VNSASPELALRLMRSRVNQPDPTFPQSPGIIRETRNLNFTFDC
Ga0247539_103166Ga0247539_1031662F058155GHGSRLFTLKLLFIYSPAVSFLTSPALGSLSRGLPGLRGLPGVDAHFVTPFGGFLLADRTFFARPPESSIRADTQ
Ga0247539_103234Ga0247539_1032341F092084YHSDIKDKMSRPLNVKTVIVPKGQNEYGRDVVRFTADYAASDLFEQCIGCYPLVQNDLKDSWREKESPSPPLMIDPDVMTDEEVERWMAKYVRGNTNAFVQTTCQNIPVKREAGSRC
Ga0247539_103318Ga0247539_1033181F079435PGFTARLSEPPACSVFDPQQKASDSGFAARRHRFSAAPGQCNRPILKNSLPAGAGNLKRPFTRPQRRFRHHCGVEAPDLPLRFPTGRLHRPVRFRTPCPKPVICLISRRSHNSHRHPLPFGSLEPYGSKRSTDAAARGSPLLNVRLSFAPRCMLFR
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