NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022744

3300022744: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MG



Overview

Basic Information
IMG/M Taxon OID3300022744 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0131212 | Gp0267124 | Ga0228700
Sample NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size325204601
Sequencing Scaffolds28
Novel Protein Genes32
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota1
Not Available12
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium1
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Ferrovales → Ferrovaceae → Ferrovum → unclassified Ferrovum → Ferrovum sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. FS411
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → bayou → fresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)33.9301Long. (o)-83.5517Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F002689Metagenome / Metatranscriptome536Y
F004153Metagenome / Metatranscriptome450Y
F012668Metagenome / Metatranscriptome278Y
F019483Metagenome / Metatranscriptome229Y
F022161Metagenome / Metatranscriptome215Y
F024289Metagenome / Metatranscriptome206Y
F031788Metagenome / Metatranscriptome181Y
F033804Metagenome176Y
F042297Metagenome / Metatranscriptome158Y
F042742Metagenome / Metatranscriptome157Y
F046895Metagenome150Y
F050213Metagenome / Metatranscriptome145Y
F051600Metagenome143Y
F051895Metagenome143Y
F053764Metagenome / Metatranscriptome140Y
F055534Metagenome138Y
F065177Metagenome128N
F071942Metagenome / Metatranscriptome121Y
F073235Metagenome / Metatranscriptome120Y
F076008Metagenome118Y
F078320Metagenome116Y
F078424Metagenome / Metatranscriptome116Y
F078624Metagenome / Metatranscriptome116N
F079658Metagenome115Y
F082260Metagenome / Metatranscriptome113Y
F095458Metagenome / Metatranscriptome105Y
F104764Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0228700_1000016All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota208486Open in IMG/M
Ga0228700_1000147Not Available71707Open in IMG/M
Ga0228700_1000149All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage70157Open in IMG/M
Ga0228700_1000412All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage39870Open in IMG/M
Ga0228700_1000447Not Available38683Open in IMG/M
Ga0228700_1001263All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria17120Open in IMG/M
Ga0228700_1004887Not Available5231Open in IMG/M
Ga0228700_1006465All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium4154Open in IMG/M
Ga0228700_1013465All Organisms → Viruses → Predicted Viral2335Open in IMG/M
Ga0228700_1015973All Organisms → Viruses → Predicted Viral2050Open in IMG/M
Ga0228700_1020531All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1697Open in IMG/M
Ga0228700_1021160All Organisms → Viruses → Predicted Viral1659Open in IMG/M
Ga0228700_1027282All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Ferrovales → Ferrovaceae → Ferrovum → unclassified Ferrovum → Ferrovum sp.1380Open in IMG/M
Ga0228700_1031083All Organisms → Viruses → Predicted Viral1259Open in IMG/M
Ga0228700_1040125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. FS411056Open in IMG/M
Ga0228700_1040445All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1050Open in IMG/M
Ga0228700_1042085Not Available1023Open in IMG/M
Ga0228700_1049257All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium924Open in IMG/M
Ga0228700_1049703Not Available918Open in IMG/M
Ga0228700_1054049Not Available870Open in IMG/M
Ga0228700_1055725Not Available854Open in IMG/M
Ga0228700_1056566Not Available845Open in IMG/M
Ga0228700_1077064Not Available696Open in IMG/M
Ga0228700_1083410All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage664Open in IMG/M
Ga0228700_1087341Not Available646Open in IMG/M
Ga0228700_1094756Not Available615Open in IMG/M
Ga0228700_1118459All Organisms → cellular organisms → Eukaryota → Opisthokonta537Open in IMG/M
Ga0228700_1128495Not Available511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0228700_1000016Ga0228700_1000016115F078624MKLCIHVRPRDDKQGWAVDVFDGRRAWTKTHLGESPLSKAEAHRLAHKLRDPKFYTARTKRAVNSGGVS
Ga0228700_1000147Ga0228700_1000147108F022161MSEHGHCPNCGVDFDGGSIWEHFFKETGSESEADRIAEMYGATREKGQWGRQIGIYDMEADRTRQWQCPDCNHIWGRK
Ga0228700_1000149Ga0228700_100014922F078424VSTSGVTYVQGLDSGNYEFTHVVATVTASGDTVVYTPSAGKRIRVYWSYAITDPGSSASPLIKIILGGTEKFRVYALSKRQQMTGPVDGTLVVNLSVAASVAVTFVLEEVGA
Ga0228700_1000412Ga0228700_100041244F002689MATINTTEARLDTHEEVCAFRYEQVNARLKRLEGILLKTCGIMLLGMGGVIWASVIKHA
Ga0228700_1000412Ga0228700_100041257F002085MNVITPVDGTSNIRFADFVRITTNGNVYRFTTLPYDITVPAVDSSAFSAVGVLMKVGEAQRDIKSTANETTVTLTGIDTAMLGFVLSNNIKGSQIEMWHGFFDTNDTLITSGGTGGLYKFFNGFINSFSISENWMEEQRMYVGTVSVSASSVQLILQNRIAGRYTNNNSWQFFSPNDTSMNRVNFIQSINYQFGKTA
Ga0228700_1000412Ga0228700_100041258F000934MSLQTILSISESVGINDQRFVGQTLSRNQKIITSELLTVVPFEFTMKPMNYLLYSQNRSVLAALRAADKSLEQNLNFGSTGWLNYIKYQGDMTGAQIAACQWQTSSAAKTLVLGSLPSIASTLYIVKTGDFVQVGRYAYIVTADVQRGIGTTVNIPVHRALMATLSAPVNAVIGQYGTTVSIGGSTYTGITFPVILRQYPTYTLVPMTNDSFLQWSGTFNAIESVL
Ga0228700_1000412Ga0228700_100041267F012668MAIARFENVDVNNLTFGTDAVGEYTTTISKWFTTRARVQDVKNNLEIDSKYRVYQDLVNLIFNYTPNMKEVVDNQNLYSITWRGLDWRITDVFESNDRMNVRLLCYRNDPSTRV
Ga0228700_1000447Ga0228700_100044740F078320MSDGGKGSAPRPFSVSQQEWDNRWDAIFSRDLEKKQDAQKKIEMPGTTGGAKIVFPEDES
Ga0228700_1001263Ga0228700_100126312F071942MQPNKVSKPGEFRTPDLYFAAYLQTAGVEMVRTDRESGRVYFVFDSTIADIDGLKTGWFNNTGKVAAQPYAHNVKSLKSVCHMT
Ga0228700_1004887Ga0228700_10048873F019483MANGTGTATIDFGVFPGSSEASVAVTGQAAISATSKAEAWFMGDDTSTSHTAADHKYAPVFMSLTCGTPTAATGFTIYARSQHKMQGTWSVRWVWSD
Ga0228700_1006465Ga0228700_10064655F079658MVIADIEADLLEYADFEEVASVSRAKSFITAAKRWLILRAESASNQSSSLSIGKNYVDDMHNRAQAYVAANDTGATVGGVRFLGAGVNFR
Ga0228700_1011557Ga0228700_10115574F104764SSDIKTIICKSVACMPTSNTSDRTYHYSGVSLRQVFGGELPSKIVLFIVHNTGVNLNATAGNHEQSYYGVYPQIQAAA
Ga0228700_1013465Ga0228700_10134652F076008MLKYFWQDAKGLKADIERHRAKEKELQDRIQELEGKDDPMSIAALRVYRRFLGQLQQSKADVVSKIGKRK
Ga0228700_1015973Ga0228700_10159731F073235MCKFKSGIVLRDEREKGGFKLLVSPWTESHSELCQIYKIKDGSRLTFARVEYSPDNMKNAYLLEKYKLTIDEERTPDWFNDEMKERVAEKMAAYIKSIIVTGDVELLIGGQFIIAPNAKVQYAKAMVINAICGGTVSAICGGTVSEICGGTVSAIWGGTVSAIWGGTVSEICGGTVSAIRGGTVSEICGGTVSEIRGGTVSANWA
Ga0228700_1020531Ga0228700_10205312F050213MTTIIQLLKSRTVLFALLLAVLSILQGYVGLLPLTPIQQMYVGIAISVIVTLLRIVTTQPIADK
Ga0228700_1021160Ga0228700_10211601F055534MRDHLNHEELEAMRILDAARVGIDVPESAITWALWVTGDLVGQPA
Ga0228700_1027282Ga0228700_10272821F051895MFSSIDKALVALVMGLLFIIQTYTGFNLSWISQETITTLIGLLTPVLVWAIPNKQKT
Ga0228700_1031083Ga0228700_10310833F033804MSGKKYFYALGQSARARGLTKIQGEVIFCLESASPYARIAYDAGYRGLSL
Ga0228700_1040125Ga0228700_10401252F053764MVNTEIRLIIFFAAKDGEALYSQQKQDQELTVAQTMNSLLPNSDLN
Ga0228700_1040445Ga0228700_10404451F082260MSQMSELTLEIEMMLDKGTHPSTISAVLGCPVDFVYDVVEEIQDSQFDELNPFNTVNS
Ga0228700_1042085Ga0228700_10420854F095458MKTIYFENVRNKEKFFCKNLKDIQKIDGVDYLRVFKMGTQRDCLVKLDSLRKIPETK
Ga0228700_1049257Ga0228700_10492571F065177RTVIIEDWNHSGGGLLPSGWTLEAGTFNHGTGIIRQGDSTFLKMVPDGKVLRISKSIHVDPQTFPILELDVRDTTSAPPALRVILTFDSGVPFFEDTLIYTVGDTRRFTFRNQDQWEGYSRNIYNDFFRSFPRKQELPKITKISLEVEIKGLPVSPLIGEIAFREDDARERINYKGAPLSGTFPPGTIIMKMPNGEVTPLYDLHVQACNHPHDPDGSGNPQEGDPLPIVYSTEIGYTTKTLSDLDTSKVLAEARALGDPRFLEIGTSPDGRRSVTSRLEFQHYTISRFRTDKVLEWRVKNLLDLQQRC
Ga0228700_1049703Ga0228700_10497034F031788MTVTYKTNPGFPGINFPVLHRVVYAHTIDGVPAQWQISYKDYIVNLWLKENCQHPYYHSPGYLREKFIEFEDDQEAMLFALKWA
Ga0228700_1054049Ga0228700_10540493F042742TDVLATVPITSSGAFTDQASNNLGAVRVKAIYIVPTGTAGSVILKDGGSGGTTRATINTVASATQPTYMLLPGEGILFRTSVYGTVSNVGYVTLFYA
Ga0228700_1055725Ga0228700_10557252F019483MANGIGTAEIDFGAFPGSNDASVAVTGQTGISATSKAEAFVMADDTSTDGHTANDHRYFNMLSGLTCGTPTAGTGFTIYATSQHKLQGKFALRWVWSD
Ga0228700_1056566Ga0228700_10565662F042297MSFEKEVLAKVAEIINSEKMAEFCYGTLSVICNEDEAKKILKKLNKDYNNKVQMERDASYGYLFDFVA
Ga0228700_1077064Ga0228700_10770642F031788MTVTHKPMKMFPNLQAPVLHRVVYAHTIDGVPAQWQISYKDYIVNEWLKENCQHPYYHSPGYLREKFIEFECDEDAMMFALRWA
Ga0228700_1083410Ga0228700_10834102F004153YGQGDESFKGIIVPHGYYKIVINQATGEVAGWQFPHTKPYVNLGNDLTKFRAPIAQIMQQAGVKYAFPQNAKEVAPGQEWPVNFGDLTKAKRAKCGANAQD
Ga0228700_1087341Ga0228700_10873412F055534MRDQYNHEEREAARILDLARAGGDVPESVITWALWCMGDLVGT
Ga0228700_1094756Ga0228700_10947562F046895ARLGNLRTPKVSSAKGEIDYFGYQLAIHKFNLGIMASGMTCRGIKFTDIKNYYGLKGRSAKACLPQFLEIVEAYNQSLNK
Ga0228700_1118459Ga0228700_11184591F051600EKAIAPHSSTLAWKIPWAEEPGRLQCMGSLRVGHD
Ga0228700_1128495Ga0228700_11284951F024289IVSNVVKACKNIDNLNKTGYNFVYQCSGFIAHYDLYGFIASYTGESLKRDLISYAGQNQWNNFRPGERDYDYMMAKKDVYNRIVAQIL
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