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Sample 3300022151
3300022151: Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_8 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300022151 Open in IMG/M
GOLD Reference (Study | Sequencing Project | Analysis Project) Gs0132838 | Gp0267157 | Ga0232064
Sample Name Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_8 (Metagenome Metatranscriptome)
Sequencing Status Permanent Draft
Sequencing Center DOE Joint Genome Institute (JGI)
Published? N
Use Policy Open
Dataset Contents
Total Genome Size 62380051
Sequencing Scaffolds 3
Novel Protein Genes 3
Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256 1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium estertheticum 1
Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Anaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States
Type Engineered
Taxonomy Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Bioreactor Biomass → Anaerobic Ammonium Oxidizing Microbial Communities From Anammox Membrane Bioreactor (Mbr) In Uc Berkley, California, United States
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified
Earth Microbiome Project Ontology (EMPO) na → na → na
Location Information
Location USA: California
Coordinates Lat. (o ) 37.8719 Long. (o ) -122.2585 Alt. (m) N/A Depth (m) N/A
Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F000344 Metagenome / Metatranscriptome 1257 Y F002525 Metagenome / Metatranscriptome 552 Y F023694 Metagenome / Metatranscriptome 209 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0232064_108499 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256 1285 Open in IMG/M Ga0232064_114437 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium estertheticum 871 Open in IMG/M Ga0232064_116146 Not Available 804 Open in IMG/M