| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022064 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127565 | Gp0198087 | Ga0224899 |
| Sample Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20 (v2) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 7368312 |
| Sequencing Scaffolds | 40 |
| Novel Protein Genes | 43 |
| Associated Families | 43 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 2 |
| Not Available | 20 |
| All Organisms → Viruses | 4 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. | 1 |
| All Organisms → Viruses → unclassified viruses → Virus sp. | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → ocean strait → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | N/A | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001411 | Metagenome / Metatranscriptome | 701 | Y |
| F002185 | Metagenome / Metatranscriptome | 585 | Y |
| F002772 | Metagenome / Metatranscriptome | 531 | Y |
| F003361 | Metagenome / Metatranscriptome | 492 | Y |
| F003678 | Metagenome / Metatranscriptome | 474 | Y |
| F004907 | Metagenome / Metatranscriptome | 419 | Y |
| F005019 | Metagenome | 415 | Y |
| F006530 | Metagenome | 371 | Y |
| F006940 | Metagenome / Metatranscriptome | 361 | Y |
| F007750 | Metagenome | 345 | Y |
| F010922 | Metagenome / Metatranscriptome | 297 | Y |
| F012879 | Metagenome / Metatranscriptome | 276 | N |
| F015097 | Metagenome | 257 | Y |
| F015800 | Metagenome / Metatranscriptome | 252 | Y |
| F017045 | Metagenome / Metatranscriptome | 243 | Y |
| F019133 | Metagenome | 231 | Y |
| F021434 | Metagenome / Metatranscriptome | 219 | Y |
| F022417 | Metagenome / Metatranscriptome | 214 | N |
| F025008 | Metagenome | 203 | Y |
| F029289 | Metagenome / Metatranscriptome | 189 | N |
| F030288 | Metagenome | 186 | Y |
| F033254 | Metagenome / Metatranscriptome | 178 | Y |
| F037707 | Metagenome / Metatranscriptome | 167 | N |
| F038722 | Metagenome | 165 | N |
| F040580 | Metagenome / Metatranscriptome | 161 | Y |
| F040920 | Metagenome | 161 | Y |
| F044154 | Metagenome | 155 | N |
| F048633 | Metagenome / Metatranscriptome | 148 | N |
| F049026 | Metagenome / Metatranscriptome | 147 | Y |
| F050395 | Metagenome / Metatranscriptome | 145 | Y |
| F050758 | Metagenome | 145 | Y |
| F055524 | Metagenome / Metatranscriptome | 138 | N |
| F063758 | Metagenome | 129 | Y |
| F065859 | Metagenome / Metatranscriptome | 127 | N |
| F069341 | Metagenome | 124 | Y |
| F069469 | Metagenome / Metatranscriptome | 124 | N |
| F082541 | Metagenome / Metatranscriptome | 113 | Y |
| F082557 | Metagenome / Metatranscriptome | 113 | N |
| F083391 | Metagenome | 113 | Y |
| F084085 | Metagenome / Metatranscriptome | 112 | N |
| F087900 | Metagenome | 110 | N |
| F093700 | Metagenome | 106 | N |
| F101122 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0224899_100006 | All Organisms → Viruses → Predicted Viral | 3384 | Open in IMG/M |
| Ga0224899_100018 | All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 2422 | Open in IMG/M |
| Ga0224899_100021 | All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 2293 | Open in IMG/M |
| Ga0224899_100028 | Not Available | 2111 | Open in IMG/M |
| Ga0224899_100045 | All Organisms → Viruses | 1801 | Open in IMG/M |
| Ga0224899_100074 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1462 | Open in IMG/M |
| Ga0224899_100172 | All Organisms → cellular organisms → Bacteria | 1026 | Open in IMG/M |
| Ga0224899_100188 | Not Available | 1000 | Open in IMG/M |
| Ga0224899_100214 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 965 | Open in IMG/M |
| Ga0224899_100219 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. | 949 | Open in IMG/M |
| Ga0224899_100248 | Not Available | 907 | Open in IMG/M |
| Ga0224899_100336 | All Organisms → Viruses → unclassified viruses → Virus sp. | 821 | Open in IMG/M |
| Ga0224899_100358 | Not Available | 804 | Open in IMG/M |
| Ga0224899_100411 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 765 | Open in IMG/M |
| Ga0224899_100414 | All Organisms → Viruses | 763 | Open in IMG/M |
| Ga0224899_100418 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 761 | Open in IMG/M |
| Ga0224899_100441 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P | 750 | Open in IMG/M |
| Ga0224899_100448 | All Organisms → Viruses | 747 | Open in IMG/M |
| Ga0224899_100454 | Not Available | 742 | Open in IMG/M |
| Ga0224899_100540 | Not Available | 703 | Open in IMG/M |
| Ga0224899_100555 | Not Available | 693 | Open in IMG/M |
| Ga0224899_100693 | Not Available | 649 | Open in IMG/M |
| Ga0224899_100710 | Not Available | 642 | Open in IMG/M |
| Ga0224899_100778 | All Organisms → Viruses → unclassified viruses → Virus sp. | 622 | Open in IMG/M |
| Ga0224899_100803 | Not Available | 616 | Open in IMG/M |
| Ga0224899_100841 | Not Available | 607 | Open in IMG/M |
| Ga0224899_100905 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 595 | Open in IMG/M |
| Ga0224899_100952 | Not Available | 585 | Open in IMG/M |
| Ga0224899_100973 | Not Available | 582 | Open in IMG/M |
| Ga0224899_101021 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 574 | Open in IMG/M |
| Ga0224899_101040 | Not Available | 571 | Open in IMG/M |
| Ga0224899_101047 | Not Available | 570 | Open in IMG/M |
| Ga0224899_101049 | All Organisms → Viruses | 569 | Open in IMG/M |
| Ga0224899_101081 | Not Available | 565 | Open in IMG/M |
| Ga0224899_101242 | Not Available | 542 | Open in IMG/M |
| Ga0224899_101314 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium | 535 | Open in IMG/M |
| Ga0224899_101452 | Not Available | 521 | Open in IMG/M |
| Ga0224899_101460 | Not Available | 520 | Open in IMG/M |
| Ga0224899_101611 | Not Available | 505 | Open in IMG/M |
| Ga0224899_101631 | All Organisms → cellular organisms → Bacteria | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0224899_100006 | Ga0224899_1000065 | F015800 | MEKKTNEKINKKILQVVNLSPSESWLEKIVEVHPIKQIAVASVIQISVLGFMAMSMLIINYIF |
| Ga0224899_100018 | Ga0224899_1000185 | F030288 | MEAIAPIDKEQNERIVWCERLLYLIVLLQFPQLATLL |
| Ga0224899_100021 | Ga0224899_1000215 | F007750 | MAFLGDFGKFFGLGSSEEVLGDVGEFVAGKPGRFVGEAAARATDSLAGDGGISPASTADQALEQSAVSVSKRGDVPQELSTMTGTRGMTSQAGFGALAPLFGTASRFLGSKSGQIVTGVGTAVGLGSAQFMGSDSRMKPVLTQSRRNKSKVRQLVNFMGIEGTANFLSQSMNVNVTPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMS |
| Ga0224899_100028 | Ga0224899_1000282 | F003361 | MKLTLNGALDLSRSINSQTIWNKRSNDFFNDLARELKQDSLNALENKPSPRSQAGRGNKNTGKTRRSVFTAKLGNTNRLRMSEGFKLATDLNYAPFIHGKPIYRGFSPIKRTKPFFPPYQEGSSLAKWAKRGQPKMNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKEGAENMLRLIAKDIARSVK |
| Ga0224899_100028 | Ga0224899_1000284 | F069469 | MKVKILVGSDFPINKKEVRAEAGEVLELPDKVAKALIKNNAAIKFDSKMMKEEEE |
| Ga0224899_100045 | Ga0224899_1000452 | F083391 | MKRTGRRLTLSNDINAVIPAKSIAALDYRLTTIFEDDRENYGWKIVDIKMFGPLQVTGFVQQQSWMLMSIRPESFETAGEFGVWAVDSQPYDNSLIGMFNVSWAQGSPYSLRTEHVATNHLSLFYVNGRIPYYNITLEEYEITSSEEIMFKIKETSQSLNKIGEQ |
| Ga0224899_100074 | Ga0224899_1000744 | F087900 | VPQKINLYYCQVDNDENHFPLAIARFTAYDEDHKPLSVEQVTYESDSNYFQAQVSAALSCGVDVSVITALPMEDFAWINNLAKQA |
| Ga0224899_100172 | Ga0224899_1001724 | F040580 | MTHKEFFNVLIGKPPAEIELEIEIRKREVEQLPDFVMKQYCLDLVKENKLQDFLIMAAMQRITETETKLLRVEMALHHYTKNVKAKKKYKTKKTLIDRFKAMLSVFR |
| Ga0224899_100188 | Ga0224899_1001881 | F055524 | SIYAMAKTGSEDYELINFQVKGAALTAWIEFVDSVNGDSGLSNDTVVAIKEATDEKKGAVKFKKPLFAVVSNSLSNEAASRADHYDNVLQDYLDDYLGYAKEPDPTEAGNSGADDFSSEAVAPEPELVEAPF |
| Ga0224899_100214 | Ga0224899_1002142 | F050758 | MAKTNDHETLIYFMRKAVILVEQCIDKNGEDDFILPVGANKVFVEVVDALEEEINRAGDFEEYDPG |
| Ga0224899_100219 | Ga0224899_1002193 | F006530 | SILILIMIWLRRKIMRLINTLIKKFEEEAIEFASAGMEEEAQDARRLASKYTEMKYNGHTHSLRTEINQKWKKKTTNGKKKT |
| Ga0224899_100248 | Ga0224899_1002483 | F044154 | MKLNTNISIENVITVIVLIASMTLAYGFMKADISSIQKELTMKVDERSFQADRNLIAFQLDVMMEDIKEIKQILKEK |
| Ga0224899_100336 | Ga0224899_1003362 | F003678 | MDQFMLYAPLIIASISLILCFYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGTIKNVGG |
| Ga0224899_100358 | Ga0224899_1003582 | F084085 | MCKDVMVTLLSLIEKEMKRRIEHSYFEEESDKWSKFHDYIREIRLTINKGGIK |
| Ga0224899_100411 | Ga0224899_1004111 | F015097 | QRLSRRVLPHRLQMHQEGFNQTSHRLRSNPPNTMKYTYMLNMDNDKAESCDVIVKFNTNDALEFDGFTSIVSEPPLYSDDLAYLEEWVIQGRERWEPMGTFSHTNRERM |
| Ga0224899_100414 | Ga0224899_1004143 | F017045 | LTRRYAKLDKYHAEIMKPSKGKKNRQCVHSSVAFKKYVKTFRQICLVENADAKFMYSP |
| Ga0224899_100418 | Ga0224899_1004181 | F012879 | MTTHFSNGVTNVRGKDGATSLFSGIKQPLITGGTSPQEQAYQNDWQIYNASDWSVTSTGGSDFQLAEYAGGWLRQGDNAPAAGEIQGIAGPEVWQFNQNQKWWFETSIAITDVSDLNTWVGFAQDGYADSDTLPTDGIGFSHLQDTTTIQFISRKNGAGVSFDMLDSAGGSTFAMLDSTLPTQTATT |
| Ga0224899_100441 | Ga0224899_1004411 | F069341 | EIDYSNDITFENEVKKPEVIEVKETVSETKAETKSSLTFGE |
| Ga0224899_100448 | Ga0224899_1004482 | F019133 | MIDEDRTYENEVRYNNDRLGGRKDRKSIKGNIPLDLESSNTPKILQKEEVNGICINHNNVCDCRG |
| Ga0224899_100454 | Ga0224899_1004541 | F025008 | MTKYILIMKICSVIHGDCLPEYNAGEHETWYDCAAVGTMMTANALSEIGPDLVNQNKIYVTFKCKE |
| Ga0224899_100454 | Ga0224899_1004542 | F010922 | MGKYRTPFANNDVIHLIEQNKEPEQKLWIAVLAKAFDDAFYSTDDKAALEALSWIKHGSDFNYVCGLAGRDPNYVRKRMLDKAIQREATILAEHKRVKTGVDNVIQLKKRGPVPG |
| Ga0224899_100540 | Ga0224899_1005401 | F022417 | MAQMPKFLEDYVTVDELISRMNKEYPECRLVSEMVGYGDDWVIFKSSFYETKEDGEPKAVAYAKQTSRDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDAAPQKEAPKKKTLDDKVKELEAEGLVEDITDKTQAIMD |
| Ga0224899_100540 | Ga0224899_1005402 | F050395 | MANAYPEIRKNKFSWTYKFLYWNRNIGEVNLYTITTNQGFQVAESAAWGNATWDGCRTMKYLGKNKEVENGTNA |
| Ga0224899_100555 | Ga0224899_1005552 | F002185 | IIMVKGKLERKYKLLHNGRELSKGLLSEAGKYDAMQILVQRFDEGREDAIDPDEVEVIDMSLKENQ |
| Ga0224899_100693 | Ga0224899_1006931 | F006940 | IPEWEATVLVTGLTKADTVEINELSEVEGVRDEVLFEKHLLLKGIKEPQLDDLDQVEEFYSKATPAIIDKILIGIYRCMAWTKEDQASIASEFPE |
| Ga0224899_100710 | Ga0224899_1007102 | F037707 | MEKIVDRLASGETLVDITKDKAMPSYRAVTRAVAADEELWSLYRKGRILQAEYYADKINGLAMEPLPEGDVRFLNAEVNRRRLEIDTLKWTTARNQPFGIRDKKEDQPQAQTFTISWAGGDTAVSAHEEEEVLH |
| Ga0224899_100778 | Ga0224899_1007781 | F021434 | PMAGSRITTSNAGFGSSFGSFLSDVGSNIVGPLSGLFSQVRPFISQQSVGQPALPTRTNLGGQESQSSGVTEGFVGGIPNILGQAARFLRTPAGQVGTGLVGGIGASMLSGGNGGMRITRKMKSQYRAVLNLAQGDYDQAASMIGVSTDFFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRAS |
| Ga0224899_100803 | Ga0224899_1008031 | F029289 | MTSAITPRYPDAASDPRLTNTADKWRTLNRQIHDKEWNGEPVTNAERDKLATLKRDLNDDKHYTPNF |
| Ga0224899_100841 | Ga0224899_1008413 | F101122 | MSLYGRIEEVAVRDFEFLRMLSKDSLGRVVSKVERTVMDFEGVEAREGFIYQCIMEEVAHLTSKGLLLEQQ |
| Ga0224899_100905 | Ga0224899_1009052 | F082541 | DGLLLSGIEFPAAMTGSNVTFDFSYDGGTWVDVVETDNTEVTYVVSPGNMVRVDPSGWAFAAIGFLRVTSDGNEAADRQINLVFKQS |
| Ga0224899_100952 | Ga0224899_1009522 | F040920 | MTSYKSRHRYYKPEKTGFLVSLVFGLLFSTATWVTLTSVNNQQQITHCEQGWQPACQSLK |
| Ga0224899_100973 | Ga0224899_1009732 | F049026 | SNDIDDVAVSDGSTVEPADLTNSMAAYSAAISKTKDIKLSK |
| Ga0224899_101021 | Ga0224899_1010211 | F063758 | HNDLLPWFIQDHGQLPDAYKKSCQKFFDKLQATSHKQQATSLPQSNGIVVTKQKGIK |
| Ga0224899_101040 | Ga0224899_1010402 | F082557 | ICSRTTKQNRRLMLKKQRLKTWRYVTTDEQVQWLLAPDLEHALHAAVELSGGSSKLKDVYLDDDDW |
| Ga0224899_101047 | Ga0224899_1010471 | F001411 | MKDKRTYTHLKEHGEDMSHENETKIKQDSGLGETIPYMIEKHKKEIWDWKQKESEWIKTDNLFKGSQKIIEELSAKLVQQVRIISDLNYQITKLKKELADKNK |
| Ga0224899_101049 | Ga0224899_1010492 | F038722 | MNITDSRDEAFEAIAEMLRSNVKKTKIASKLAADYCVSDKTVYKWINKVEEMYDIEPIESIIQQHKSELKSEIYQDLIRDYHKAKDEKDDELRRKIGAILNNTYLKKINFN |
| Ga0224899_101081 | Ga0224899_1010812 | F004907 | VETRHELGVANEELWSLSDWPEGEGFGSSDHFEYDRRIQESIAFERKFIQAETELVTINRLEESPKNETVRAYMKMNDKLKEGMVA |
| Ga0224899_101242 | Ga0224899_1012421 | F093700 | DSGDLFLAEEGTSPLVSDNLVLNATQAPQSFGFIVLDGTDADGSNAGDNINMEDSHDIDTARLITEDSYVVQIGQARQNAGEKIIVEDNRSSAVQLSQIGSFTFAEFLRRDKIIIENNFDINHLEFKHHISVEGGESPIALEDSEFFIELEEETKYKTKYRNNGQSESSQAHGEEADGVL |
| Ga0224899_101314 | Ga0224899_1013142 | F002772 | EELVKSKGAFKTPTIHKDDTEKGFDDIVKLYLKGLLTFQRKYDIDLVGPSNEHMVRFKWYLITLDKSKTLKDIRSVIKAGKVA |
| Ga0224899_101452 | Ga0224899_1014521 | F033254 | MRKFKHEKVWSFNDEHVIDGMIYSNELEKYVTVEEYTDYYYA |
| Ga0224899_101460 | Ga0224899_1014602 | F048633 | MPMKKAMPGGKIVNKGKYKHGGKVHRNKKGHGGVMTIVLKKDKTKKK |
| Ga0224899_101611 | Ga0224899_1016112 | F065859 | RMSFLNNLSLKDRRRLRVIVKQTHLKHYPTHMITDYEADKLVEAFGEETIYKLLSANVGTNVD |
| Ga0224899_101631 | Ga0224899_1016312 | F005019 | IKCGMNADVVEKGKDYCCQCWFKYFSGESIEEYEKRNNELEQARKDKKNG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |