NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021843

3300021843: Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 spades



Overview

Basic Information
IMG/M Taxon OID3300021843 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0130338 | Gp0238878 | Ga0226657
Sample NameAnaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 spades
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Toronto
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1076648503
Sequencing Scaffolds17
Novel Protein Genes18
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus2
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium1
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Theionarchaea → unclassified Theionarchaea → Theionarchaea archaeon DG-70-11

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes From Anaerobic Digester Of Solid Waste
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationToronto, Ontario, canada
CoordinatesLat. (o)43.5479Long. (o)-79.6609Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001564Metagenome / Metatranscriptome670Y
F003622Metagenome / Metatranscriptome476Y
F011397Metagenome / Metatranscriptome291Y
F022996Metagenome212Y
F024382Metagenome / Metatranscriptome206Y
F046219Metagenome151Y
F053724Metagenome140Y
F061015Metagenome132Y
F066219Metagenome / Metatranscriptome127Y
F069433Metagenome / Metatranscriptome124N
F070092Metagenome123N
F080820Metagenome / Metatranscriptome114Y
F085858Metagenome / Metatranscriptome111Y
F098758Metagenome / Metatranscriptome103N
F105265Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0226657_10004826All Organisms → cellular organisms → Bacteria13993Open in IMG/M
Ga0226657_10017182All Organisms → cellular organisms → Bacteria4740Open in IMG/M
Ga0226657_10018559All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus4471Open in IMG/M
Ga0226657_10026437All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium3403Open in IMG/M
Ga0226657_10028602All Organisms → cellular organisms → Bacteria3210Open in IMG/M
Ga0226657_10105127All Organisms → cellular organisms → Bacteria1237Open in IMG/M
Ga0226657_10125954Not Available1084Open in IMG/M
Ga0226657_10171664All Organisms → cellular organisms → Bacteria868Open in IMG/M
Ga0226657_10173478All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli861Open in IMG/M
Ga0226657_10175606Not Available854Open in IMG/M
Ga0226657_10186448Not Available819Open in IMG/M
Ga0226657_10195557All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium792Open in IMG/M
Ga0226657_10196673All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus789Open in IMG/M
Ga0226657_10235043Not Available699Open in IMG/M
Ga0226657_10236839All Organisms → cellular organisms → Bacteria695Open in IMG/M
Ga0226657_10241991All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus685Open in IMG/M
Ga0226657_10307785All Organisms → cellular organisms → Archaea → Euryarchaeota → Theionarchaea → unclassified Theionarchaea → Theionarchaea archaeon DG-70-1583Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0226657_10004826Ga0226657_100048261F024382MNKPHQIEAQRAAKHFEAIAADGNPTVQIMRSMAEMLGWLRQGVGELIRQAGLQLMELLMQAA
Ga0226657_10017182Ga0226657_100171821F001564PGGPRPKLLNGEWPERPSLRFLVHWALRREELCDPRLCPDAPEDGGRCDHCPLDKLDAAQSSETGLLIRRALDLHAALKLGVKISLDEIRADEFYAMLILEEERERLDQERINSHGR
Ga0226657_10018559Ga0226657_100185595F069433MAHKLPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNTEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELAACKSGRGESGYCPQDSSGCMDFTDPTITALSTEVRGIHFRQMMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECHHSINHYWICASINLPSATEHPYKSANPPVAWDGYVPWDWCVYTPPGLNWGTCEYSGGHNHSAWNCKCNPYS
Ga0226657_10021278Ga0226657_100212786F066219LEAIMKVFLVFLILCIGCLIHANIVEFFESIPPVLRYAVGTVITVYALSWAYSWFFDPIIVVADTKYGAFNFGPFIVVEPCIWYSNDVEWRNTVLNHEYTHYVQHAVYGPILSVTYPILALYSNIKSGNQWDDNYWEIQAMQAPDTAPSWKPLAVWVW
Ga0226657_10026437Ga0226657_100264376F070092IHLMISQRMASDLAIEKRKKELYDEVMAAKEKAFKDELADLEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKSQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0226657_10028602Ga0226657_100286024F061015MAERKRQRQVRCENQYVQDRLASQKMSQVYHWLVPEDPLGEPAAELALAKHEKDRSHLRASFL
Ga0226657_10105127Ga0226657_101051271F001564APEDGGRCDHCPLDKLDAAQSSETGLLIRRALDLRAALKLGVRISLEEIGADEFYAMLILEEERERLDAERVNRERS
Ga0226657_10125954Ga0226657_101259542F053724MREIRVLVTLQVDECEPDAKIDRETMEDAAVEAVENAVRFAYDNGFSHTYADELSIGFVDAVLYEEDLDDEDSLDEE
Ga0226657_10171664Ga0226657_101716642F085858MKEFQEVIKSKIIPTTFVFQCTICGLEISDYDRHFGLIKMNQHVIAEHSDQVKSLDMEDLYSRKPTIVLE
Ga0226657_10173478Ga0226657_101734781F080820PTPELDRIIAGRSRPPLSRGPFPFLRGRFSGRLGAFGATRGLCTTRRFAMDGKQKDARYERWLARAAAAYERMFCDKNQKELVTLTEREEMAVALSKELAAFLLEEHVAADPAKAPAEASLGCCPKCGQPGTPAPPKGGKRGAGMPERMVRTRAGDIDIRRERWKCGRCRIVFFSARRSPEVGHGRV
Ga0226657_10175606Ga0226657_101756063F011397ALLKRTYPVSQYERFCDGYDYILKNSSAEERLEWGINDDELQRTIKPGEKYIYQVAKEGREFKIMSICFANYVIIRKKIFKFEDD
Ga0226657_10186448Ga0226657_101864481F105265MNGKKVTKAAIDRALADPVTDALSKHGITLDELARRLRQDLDRKETKILKVKGAIFDWAEYLERETAKLRGEDLPAPAVEKPYRVLASSSDETVIAIDVDSIGTQVEAREDAQKLLGLYKERLELSGPGGGPLSYDDIPAEERELLLAVTRDYERRLNEKSAKRGKAAGRKVGKTGRRTRQDRPGACESR
Ga0226657_10195557Ga0226657_101955571F022996METIKFNISKIKSDIKILVELQKFYKNQRKTETLVGDRQMHAGEAAWKHRVNREKLRLMYAAYGQATGKSYSQIESQYPEDQHPLKAFQSGIENILCE
Ga0226657_10196673Ga0226657_101966731F069433MAHLIPPKQCSSNVPAWTDPALSDLSTKVRKVHIDELRLFLNTEFVRRGLSQASFTDPAITALVTEIRKVHVDELRTELAACKSGRGTPGYCPQDGSGCMDFTDPTITALSTEVRGIHFRQMMQKVQALMTGCICETEQCQYCADCGYHYTSCSYAGVACDDHKYSECQYSINHYWNCASINLPSAAEHPYKSANPPVAWDGYVPWDWCVYTPPGSNWGSCE
Ga0226657_10235043Ga0226657_102350431F053724PNRSYSSNTMREVRVLVTLQVDECEPDAKIDRETMQDAAVEAVENAMRFAYDNGFSHTYADELSIGFVDAVLYVEEELDGE
Ga0226657_10236839Ga0226657_102368392F046219GTVRSEKESVDLIRRAIDLRTALKLGVRIGLVDIRADEFLAMLVLEEERDRLDREQLNNRGRQ
Ga0226657_10241991Ga0226657_102419912F003622MCYPIEPRQSKLKAQIFKLEIMRAYKQELEIIANDILNQNAYAKGNENKPNYTNREFMNALIIFQTALMDKMWDNQDFDKMKMQDRENMAVQCGLDLRKLIHTYTGLDIHKIEEFL
Ga0226657_10307785Ga0226657_103077851F098758INLKVYNKLLTILFMDYKRLCLFFTMVLIGFVILFSGCNTKKNEPPPVIPKDLCENVTCPDVCHGEDLWSQKCSDGVCIDFVRIEPCSEKCGCVVDLCAKVKCIDKCRGEDLWSYKCVNGVCVPDFLKESCSVECGCAPKFFYKLVPEARYRLPEVGIIANVYSIRSDQVIRAVETCRSSFCSDPPTVYYTKYQ
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