NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021054

3300021054: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_4mM



Overview

Basic Information
IMG/M Taxon OID3300021054 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128781 | Gp0225666 | Ga0210240
Sample NameChrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_4mM
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size84866213
Sequencing Scaffolds10
Novel Protein Genes12
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii9
All Organisms → cellular organisms → Eukaryota → Haptista1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025010Metagenome / Metatranscriptome203Y
F043264Metagenome / Metatranscriptome156Y
F068493Metagenome / Metatranscriptome124N
F074505Metagenome / Metatranscriptome119N
F082271Metagenome / Metatranscriptome113N
F088418Metagenome / Metatranscriptome109N
F104622Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0210240_103650All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii5777Open in IMG/M
Ga0210240_103669All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii5705Open in IMG/M
Ga0210240_104141All Organisms → cellular organisms → Eukaryota → Haptista4540Open in IMG/M
Ga0210240_105252All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii2641Open in IMG/M
Ga0210240_105509All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii2350Open in IMG/M
Ga0210240_106069All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1802Open in IMG/M
Ga0210240_107869All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii904Open in IMG/M
Ga0210240_108448All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii763Open in IMG/M
Ga0210240_108807All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii693Open in IMG/M
Ga0210240_109599All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii572Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0210240_103650Ga0210240_1036501F043264VSTAADLTSALANTAVGRIVLASSTYYLTAELSITRSVVLEAAAGATVTLNAQASSSSPRRVLNINPGSSGVVQLIGLGITGGYMGGAGGVFV
Ga0210240_103669Ga0210240_1036691F104622ILMGWDNLVRPPLKMFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGGNTDMAMAVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGRVEEGVRG
Ga0210240_104141Ga0210240_1041414F074505MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPHQQRTTRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGIL
Ga0210240_105252Ga0210240_1052523F043264MPNHRRELQTAVSTSAGLLSALANTGVGRIVLDPGTYFLNAELSVTRSVVIEAAVAGSVVLDAQASSSSRRRVLYINPGSLGVVQLIGLNTTRGYVQGVRGCRRDLLIPHRPNGMPC
Ga0210240_105509Ga0210240_1055091F025010AILAERLDAAANIEAIEKIRGAMDSLKTAGETAVHSATGTFLFVWAKVSNVISKRADFTYKLEAAAKSKSAVHSVTLVRPETEAEFYEMTHLFIMTVIALGLASATIVIKFIDDVVFGTVRMREPFTVAHELVVCYFREMDFDPARVLHMGNVFRRGGQDTLLSEARRNAAAFFRAGGGILQPKGNNDDKLGNVKTIKNTKPNGKSDESSKKPCPDFNGGRPCKNLKPDGTCTFSHKCNQFVSDKGPGGYCMGPHARCTGCDYDAGKKLRAPAA
Ga0210240_106069Ga0210240_1060693F074505MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQDAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPRPERTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFSRRGALCILACVVQGILCA
Ga0210240_107869Ga0210240_1078691F082271AMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCSEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALGSLQPEGRAMRSALNTWAGVTMQRRSMIVAVSSLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREV
Ga0210240_107931Ga0210240_1079311F068493KNRHLARGWTAWHAEWADSVAARTIMRKSLGHLLNRGLSRGFGAWLEMAIERAIFLQKLRKGLSRMVNRKLAIGFDRWIAAFAPRDDPMSKALLLFLNRGLSRGWVAWYTTWEVLRAKRESMRKSLSHMLNRGLSRGFGAWLEMAVERKAFLQQLRKGLSRMVNRKLALGFASWSEQTQGSAAMSKGLRHMMNRGLSKGWRAWQSMVEELKAKRESMRKSLGHMLNRGLSRAFGAWSELAAERAEFLQKLRKGLSRMTNRKLALGFDGWRAAFAPRDDHMSKALRHMMNRGLSRG
Ga0210240_108050Ga0210240_1080501F068493SRMTNRKLALGFDGWRAAFAPRDDHMSKALRHMMNRGLSRGWKPWSEKAAERKVFLQKLRKGVSRMVNRKQALGWGAWSEMAAERSEFLRKLRKGLSRMVNRKVALGFYAWRAAVAPRDDHMSKALLHFLNRELSRGWGAWYETWEVLRAKRESMRKSLSHMLNRGLSRGFGAWLEMAVERKAFLQQLRKGLSRMVNRKLALGFASWSEQTQGSAAMSKGLRHMMNRGLSKSWRAWQSMIEELKAKRESMRKSLGHMLNRGLSRAFGAWSEMAAERAEFLQKLRK
Ga0210240_108448Ga0210240_1084481F082271QRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVMMQRRSMVVAVASLIRSMELWGLRAWCAYAELVRMNQEEVETPLRQAIQSMSIRSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNC
Ga0210240_108807Ga0210240_1088071F088418VAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVDVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMKKRDKRAREVLELMPVAPGCPQAIIALLMSQANTHRSAADIKVLRRCGAAAVQFAEAGRKQPTSATSKVVPAETIKALDAHRAAETQKNGKIRAWMRDEDVALLELHAGDLPMSTHHPALVNRSHSARRNRMLLL
Ga0210240_109599Ga0210240_1095991F088418MRCYSVRLLLVAMFATQHTDFESFANALGALPNQPPVPMECEPSPSPIDVDAKAIVQQVVNVLLKHSSSPAVHLEVLDRRWLALARNESVTNLTSTLLPAKVPAMKKRDKRAREVLELMPVTPDCPQATIALLMSQASTHRSAAD
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