NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300020302

3300020302: Marine microbial communities from Tara Oceans - TARA_B000000441 (ERX555996-ERR599018)



Overview

Basic Information
IMG/M Taxon OID3300020302 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0117220 | Ga0211595
Sample NameMarine microbial communities from Tara Oceans - TARA_B000000441 (ERX555996-ERR599018)
Sequencing StatusPermanent Draft
Sequencing CenterCEA Genoscope
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size87249322
Sequencing Scaffolds25
Novel Protein Genes25
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri1
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus3
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → Micromonas pusilla virus SP1 sensu lato1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
Not Available8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED1041
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationTARA_065
CoordinatesLat. (o)-35.2528Long. (o)26.317Alt. (m)N/ADepth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011904Metagenome / Metatranscriptome286Y
F012717Metagenome / Metatranscriptome278Y
F013776Metagenome / Metatranscriptome268Y
F016003Metagenome / Metatranscriptome250Y
F017731Metagenome239N
F023136Metagenome / Metatranscriptome211Y
F023616Metagenome / Metatranscriptome209Y
F024529Metagenome / Metatranscriptome205Y
F030783Metagenome / Metatranscriptome184N
F041247Metagenome / Metatranscriptome160N
F054876Metagenome / Metatranscriptome139N
F054924Metagenome / Metatranscriptome139N
F062730Metagenome / Metatranscriptome130N
F062836Metagenome130N
F065241Metagenome128N
F077772Metagenome / Metatranscriptome117N
F084269Metagenome / Metatranscriptome112N
F087299Metagenome / Metatranscriptome110Y
F088930Metagenome / Metatranscriptome109N
F091241Metagenome / Metatranscriptome107N
F093745Metagenome106N
F103879Metagenome / Metatranscriptome101N
F105107Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0211595_1000946All Organisms → cellular organisms → Bacteria4429Open in IMG/M
Ga0211595_1005363All Organisms → Viruses → Predicted Viral1630Open in IMG/M
Ga0211595_1005984All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri1521Open in IMG/M
Ga0211595_1008518All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus1226Open in IMG/M
Ga0211595_1009084All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus1176Open in IMG/M
Ga0211595_1010160All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → Micromonas pusilla virus SP1 sensu lato1099Open in IMG/M
Ga0211595_1010241All Organisms → cellular organisms → Bacteria1094Open in IMG/M
Ga0211595_1010368All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales1085Open in IMG/M
Ga0211595_1010567All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus1074Open in IMG/M
Ga0211595_1011713All Organisms → Viruses → Predicted Viral1007Open in IMG/M
Ga0211595_1012945All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique947Open in IMG/M
Ga0211595_1014097All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.900Open in IMG/M
Ga0211595_1015746All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon841Open in IMG/M
Ga0211595_1017393All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria792Open in IMG/M
Ga0211595_1017676Not Available784Open in IMG/M
Ga0211595_1017830All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104780Open in IMG/M
Ga0211595_1019050Not Available750Open in IMG/M
Ga0211595_1020181Not Available724Open in IMG/M
Ga0211595_1020689All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97713Open in IMG/M
Ga0211595_1021868Not Available690Open in IMG/M
Ga0211595_1022095Not Available685Open in IMG/M
Ga0211595_1028642Not Available586Open in IMG/M
Ga0211595_1030493All Organisms → cellular organisms → Eukaryota565Open in IMG/M
Ga0211595_1032817Not Available539Open in IMG/M
Ga0211595_1036384Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0211595_1000946Ga0211595_10009466F088930MKVIKVISISTFLFMLCLIENYLNTFISLDFGVYIFLISLIYIGTEFFNQNLVIPIFLSGILYDSFFSTYYLGLYTSIFLVVVVLSNFVVSRYSRSNAFYIITISLCLLIYK
Ga0211595_1005363Ga0211595_10053631F011904MSFDPPAGILDIGNATLRVGKLEVAETTGLSQGLQNIIKNDLLVTENETYTTDQKWGLKLPNTWVSEFELKGGSGKYVEFNFYNEGSTSNTLGYTLNFKDTTLSLRYDNGSWTTATIPTIVDTYRKVNVFFERNVISVTIDGTQVLYYKHTGTPPPVMSRVTSATGGAFVNAFFESNHSGNSEFKNLRIVNGRFISDQTSNIAFMGGNLGVGVNSPQEALDIRGNMHLNRVSNVSSVSVDSNVVTEYTGPHDRPLGKYPEVAMTADDNLSTLGYKASVSSQLTGNDAFRAFDATGATTYWHSQYPYYTHVTGTYNPGQSSGGTGTPSGTLPTTELISGHQGEWIKL
Ga0211595_1005984Ga0211595_10059841F054876MENSISLGLIHGLVYGIVPVAPWFVALKRYLLEGKEKGQLAVAGTVVGQVSLLALTFFGWSQVLWVWYYFEPALIILGTMAVVRCALDCWVEQPSSLQATVVPLANKKEGFYYFLVNFGLMFCNPTHFEGSQTLISSIPGNRYFYLVAFTITYTAIIFAFWATVGHRIFGKACSGFGAQQTLNRYRIRRVAVAMVAALFIQFGNCTPEALVIYHFDSLLAYTPFEQLKHFKTRGYTWEPVNNNGSEFTRQSPRSTNKSGILPEQNPRSYIQNKSMWNTETRYDECNQTRERELSNEDWNNEATFHEFNGINQATLHARLIPFNLYMVPNWEKHENKEYLLTLRKIRHEMDEKLLSEGSILEKATLLPFSDNWEYEVDYVTSPRLLEQKAESKASFEDMRKLIRTTKWTSDHLHLGNGNDIEASYGKLHKLPAEVRIPWHYPAIKPSETLNSADEVET
Ga0211595_1008518Ga0211595_10085182F016003MKSIYTSIIMKSIYKTCIDGELDELKKRRNEINEIIEELPKNDDDLREDEDDISFAIAFCKDHDTALEMYKYLYEKCGYPKHCKYYAMVGAAASRNAKLINYMYNNLEENEKSYFLGELEDELAMTDHPNPNVFIEYALLELNN
Ga0211595_1009084Ga0211595_10090842F017731MLRPPLSSTIFTRPNTSRRTRTSAFRTENESSRLRDIEIRIERTRGHCSLAYGRQEKAYIKVLDHLEKERLDILKGTKEKSCCNTINDSCTE
Ga0211595_1010160Ga0211595_10101601F011904MSFEPPAGILDIGNATLRVGKLEVAETTGLNQGLQNVIKNDLLVTENTTYTTNQKWGIKLPTTWVAEFEVKGHSGKYIDFNFYNENSVSNAQGYNLTFMDTTMTLKYDNGSALGGGAVTIPTIVGTYRKVHIFFERNVIAVSIDGTRYLYDKRPSVLSRVISATGSAFVNLFIEEDGDDSAFKNLRIVNGRFISDETSNIAFVGGNLGVGVHSPQEALDIRGNMHFNRVSNVSQVSVDSNVVTEYTGPHDRPLRKYPELALTADDNLSTSGYKASVSSLLTGNDGFRAFDATEATTYWHSQHPYYTHVTGTYNPGQEADGAGTPATDTTLPTTELISGHQGEWIKL
Ga0211595_1010241Ga0211595_10102413F084269MFRLKNKKQRENSLIVMRAISRIKKYEMNENSSYGLHNSLL
Ga0211595_1010368Ga0211595_10103681F077772MTEDSSGPQISGEPTTININAGPQVMGGQTQSTNAVAGLVLAILGLTTLLGGAAALCCGPSLCFTIPAMFLVSADKKNIGGTHHPDSGMINASNVINIISLIGALLGLGLYLVFFIFLGGVGAFA
Ga0211595_1010567Ga0211595_10105672F016003MKSIYRTCIDGELDELKKRRNEIDEIIEDIPNVDNDLREDEDDLSFAAAYCKDHDTALEIFKYLYEKCGYPRHCVHYAMVGAAASRNAKLINYIYNDVDEHEKEEFIGDLEDELAMTDHPNPRVFIEYALFELNKV
Ga0211595_1011713Ga0211595_10117132F024529MFTPITKRNKFGATYQWAILSVLPMDNGTGCQAQDGMRPTDINAALGMPNEARTGLSMLLKVMAAQGLIKRHELGPRWVEYTRLLPLRKREWIARMIRG
Ga0211595_1012945Ga0211595_10129453F023136MNVIERKAIIRKDKNTTPKDFRLDFKFNICFVDIIKEANIQNCVRKIIGKTKSGVTAKNLIKPGAXAYPTAIKTFLNGTL
Ga0211595_1014097Ga0211595_10140973F013776MKEFSFTVTKTGWIHVEADSVEDAEARLQENFGHLYVITETGEELSNGWETTGEVELEEECAFNDYEEDYD
Ga0211595_1015746Ga0211595_10157461F062730MGTETPIGYRLVRVGVRGRVPTLRTRAPEDLTTRQKYDLRYREKHRAKLLAYHREYYRRKRTQ
Ga0211595_1017393Ga0211595_10173931F105107SLNDILDCRMSNFFSYIYKHIFLRCFFISLLTLLVFFVLDFVISLITESSGFSMLQIQNTAIESFEGLLSYFEMIMLLSVLITLSIFKQANNIAILQSFGQSPLKISMIAACAPLILSFLFIGFSLLIPSNDVDTYPQWELEDQSISVLQKDKVISIDFSSNKINKVLSTTPNDLSANTEPSSVLQKMSSRTLSLPFATLALVLLASIFLFKHQRNFSISQSIFFGIAAGFGYKLISDLFYLGFRSFDLNINLGIYIPPTIALC
Ga0211595_1017676Ga0211595_10176761F103879THLERIDSGLEQHKPESRLMTHFRRVVQKDKTTVGIGKSWVSTTRSGLSRIVDSRGALKHKREKETRLSLRNWSYRQELALDRRTTYWRERKKMRLYSIEYNLKNVTDTDHNQNSRVTRLYFRDALIESRQKRQLRVSLEPSTYDTFATRKLVVRARKPVAEPSELLAGDIISVWFDWAKTA
Ga0211595_1017830Ga0211595_10178302F093745MHLSKNKKTSFILNTLGIEILSISEKLDNSVQTYVHCSLRDRILTLHSHSLDEYSERELELLSKIEASVSKENKKNRILELTWDDFLNNHELLNIEIILNFTNIKIDKKNELTPPNLALLIKKPEEKKLLWEKMQALLNDD
Ga0211595_1019050Ga0211595_10190502F054924VEVKTRKIPGIIISLLLLYLTAVVSIFVLKVAFFFAAIGVIFKSFTK
Ga0211595_1020181Ga0211595_10201811F023616INTGIMNSAEDKPNQIILNALPLDFVKYLEIVVEAVXDINPCPENLIKKIATNKKATDDVLEKKKEEKDKSIVTKIANLSTFTSSIFFPIHIRSKLLNRVAEA
Ga0211595_1020689Ga0211595_10206893F062836MEKIRLNEQKRRLLKKEWSHTVYNNMPMQVEEDLRL
Ga0211595_1021868Ga0211595_10218682F012717LYVSTWGXKVVAGTSAIFHPKKYLPMLGLENVVDLVKKDFYTKKDIDPCYNFFYSSALTRLISLEIASSTFNSQCLSYEMLCKKIPPKLGCRSTIYSTLNYAVSKGFFIKKFSKSDKRMKAYCLSESYSLMLTQWYLDQKKYFSN
Ga0211595_1022095Ga0211595_10220952F065241MSDMSYTFEQFEQDKQTLLNLIADCEELEKQQNSDEFFIQCDEFAQEKYTVXYEFSYLHC
Ga0211595_1028642Ga0211595_10286422F030783MITDFKNKTPFLLGLLFLAFVTAHEVEHISEAFEVQDEGFELSCDYCEETQSKDLVNSKTNITFIDFDIEGSKLVSLTDQSLSKNYHQRAPPKI
Ga0211595_1030493Ga0211595_10304931F091241YSIIHQPQSVKTSVSTNDVHNSDTNPYNFFGGSKKIENSEIAGRADHLTKYVFKYGTKFYPNAPCEMSGDKTLSLQSTITQLGLTNPYIATPEYGTNLMSNQYEARDFVLVNSFKTTGDKVENGINTAATSAPVEIDLTFAQATQNKQLITFVEQANTLYIKNDGISSMVKG
Ga0211595_1032817Ga0211595_10328171F041247VSDFYSVEAKTLKFDKEMIVDFYNTIDQTKWVHRQDKLPQYWPIDENNTFDRTHEFYKQLQQNINVDIDEDRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVERVEHTNNTPIIYSANYMHGTIKSLDNKNDRITFVVDIKYWFARVRSKYNK
Ga0211595_1036384Ga0211595_10363842F087299LSALIISQFNFFANFIARFDLPEAVGPAKSNNFLDKINLF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.