NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019710

3300019710: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_5-6_MG



Overview

Basic Information
IMG/M Taxon OID3300019710 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129088 | Gp0217675 | Ga0194009
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_5-6_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size104989930
Sequencing Scaffolds40
Novel Protein Genes43
Associated Families36

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium4
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfocapsaceae → Desulfocapsa → unclassified Desulfocapsa → Desulfocapsa sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini1
Not Available15
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta2
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → unclassified Thiotrichales → Thiotrichales bacterium SG8_501
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria4
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana2
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomeriversediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000200Metagenome / Metatranscriptome1633Y
F000331Metagenome / Metatranscriptome1285Y
F001488Metagenome / Metatranscriptome686Y
F001926Metagenome / Metatranscriptome616Y
F004052Metagenome / Metatranscriptome455Y
F004928Metagenome / Metatranscriptome418Y
F005564Metagenome / Metatranscriptome396Y
F005815Metagenome / Metatranscriptome389Y
F008223Metagenome / Metatranscriptome337Y
F008424Metagenome / Metatranscriptome333Y
F010065Metagenome309Y
F012457Metagenome280Y
F012874Metagenome / Metatranscriptome276Y
F023596Metagenome209Y
F024001Metagenome / Metatranscriptome208Y
F026012Metagenome / Metatranscriptome199Y
F031452Metagenome / Metatranscriptome182Y
F039151Metagenome / Metatranscriptome164N
F041204Metagenome / Metatranscriptome160Y
F042909Metagenome157Y
F047065Metagenome / Metatranscriptome150Y
F053659Metagenome / Metatranscriptome141Y
F058634Metagenome / Metatranscriptome134Y
F061862Metagenome131Y
F062772Metagenome130Y
F063712Metagenome129Y
F069741Metagenome / Metatranscriptome123Y
F070125Metagenome / Metatranscriptome123N
F073262Metagenome120Y
F074892Metagenome / Metatranscriptome119Y
F080062Metagenome / Metatranscriptome115Y
F085722Metagenome111Y
F086821Metagenome / Metatranscriptome110Y
F090408Metagenome108Y
F092076Metagenome / Metatranscriptome107Y
F105196Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0194009_1000009All Organisms → cellular organisms → Bacteria → Proteobacteria8311Open in IMG/M
Ga0194009_1001769All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1902Open in IMG/M
Ga0194009_1001808All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1883Open in IMG/M
Ga0194009_1003672All Organisms → cellular organisms → Eukaryota → Sar1441Open in IMG/M
Ga0194009_1005995All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfocapsaceae → Desulfocapsa → unclassified Desulfocapsa → Desulfocapsa sp.1201Open in IMG/M
Ga0194009_1007201All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini1121Open in IMG/M
Ga0194009_1009037Not Available1029Open in IMG/M
Ga0194009_1009564All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1006Open in IMG/M
Ga0194009_1010464All Organisms → cellular organisms → Bacteria → Proteobacteria971Open in IMG/M
Ga0194009_1012629All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon904Open in IMG/M
Ga0194009_1013031All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta894Open in IMG/M
Ga0194009_1014081All Organisms → cellular organisms → Bacteria868Open in IMG/M
Ga0194009_1015320Not Available841Open in IMG/M
Ga0194009_1015373Not Available840Open in IMG/M
Ga0194009_1017065All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.807Open in IMG/M
Ga0194009_1019894All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium762Open in IMG/M
Ga0194009_1021179All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → unclassified Thiotrichales → Thiotrichales bacterium SG8_50745Open in IMG/M
Ga0194009_1022862All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta723Open in IMG/M
Ga0194009_1024555All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria704Open in IMG/M
Ga0194009_1024966All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria700Open in IMG/M
Ga0194009_1025090Not Available698Open in IMG/M
Ga0194009_1026937All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium680Open in IMG/M
Ga0194009_1028479Not Available666Open in IMG/M
Ga0194009_1031200All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana644Open in IMG/M
Ga0194009_1032255All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria636Open in IMG/M
Ga0194009_1034364All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria622Open in IMG/M
Ga0194009_1040667Not Available585Open in IMG/M
Ga0194009_1041781All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana579Open in IMG/M
Ga0194009_1042304Not Available577Open in IMG/M
Ga0194009_1043295Not Available572Open in IMG/M
Ga0194009_1043873Not Available570Open in IMG/M
Ga0194009_1051949Not Available537Open in IMG/M
Ga0194009_1054269Not Available529Open in IMG/M
Ga0194009_1056038Not Available523Open in IMG/M
Ga0194009_1057617All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon518Open in IMG/M
Ga0194009_1057635All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria518Open in IMG/M
Ga0194009_1058804Not Available515Open in IMG/M
Ga0194009_1059271All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium513Open in IMG/M
Ga0194009_1059561Not Available512Open in IMG/M
Ga0194009_1060702Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0194009_1000009Ga0194009_10000097F004928MSQALHSIESEPNHTVEIVVHITETLGEQQRGDLVAALEGNAGIATAEFCPLRYHLMLVRYDTELYSSQDVLERVTSHDVSARLIGPV
Ga0194009_1001769Ga0194009_10017692F053659VNIDQAKPKRQKRTITLYLGNTLGEYEATYLTETGLKALIGRVETADSLDWGCLATGHEAGCPRQLQFTHHDSYSRWAKHFNGGQSRVVIPRVRCLDCGAVFSVQPSFIIRYKRYETDAAEKLMTLLFITEDSYRM
Ga0194009_1001808Ga0194009_10018081F012457MMIKDLEMSKDLDRDALSAVRGGRNSIEQGGVYAPVANAGGGFSFGSPTTIVSTPINAPSAVLNDNDLHLKLANKSTSVLGSLGTVVWQ
Ga0194009_1003672Ga0194009_10036723F001926VRDEDIPDINNPKTMKAVLEGDKLMKEVLNGGYNVHPVPAPNSEMKEKIMKRYERKRIKIEKLLTLGYTTSGDP
Ga0194009_1005995Ga0194009_10059952F074892MTAMMQKYALIALLGLLLSACSERGENVYRTWVGPDRSSMAIVTLRLGEDVRDITIRERVLPRSEYGAILLVPGAYTLYEHDGANIGISISPMLINVEKARANGELIIGHTYVLRASKSKETGERALWIEDARSGEVFIDRR
Ga0194009_1007201Ga0194009_10072012F062772MSLNGIWSCELGGAYGWEAVGTLFLKDGRLQGCGRNHYTLGAYKTKGDGAVFHMELNQYGTKRTLFGQKKEQVCVTVKAKRDGDKLIGEATLPGRRKYAIFVRFQRRADLPEEKTH
Ga0194009_1007201Ga0194009_10072013F062772MNLNGIWSSELGGAYGWEPIGTFFLKNGHLMGGGRNHFSLGTYKTKGDSAVFHLEIKQFGKKRALFGQKSEQVRVVVKGKRDDDKMIGEATLPGHVEYGICVRFQRRADLPEEKTH
Ga0194009_1009037Ga0194009_10090372F004052MRILTMIVLFSLTALLCACDQRHTASGVDPELGRECFESHRAALPPGSQYEGIEALAGSRLTIRVMNGVEVVTLACELNPDGTSLSAVE
Ga0194009_1009564Ga0194009_10095641F004928MGQVIQSIMAEPENTVEIVVHITETLGEQRRGDLVAGLEDNGGITAAEFCPLRYHLMLVRYDRDIYSSQDVLDRVRAQNVDARLIGPV
Ga0194009_1010464Ga0194009_10104643F105196SAARRTLLKQLLNAPDRLNWERARGLIIRDIPIVTLESAVRSVRRNTAADRTPDPFTLYRALRFAVDYESRETESDCGGICR
Ga0194009_1012629Ga0194009_10126291F010065VRGESGISFTGLYICGVISLVMLVLKLSVMDAWSWWRVMLPVGLIVGFTVTNMVVAFIYLSFAHIPERPDGDEAELLEPHTINVHYVAAMLFFVVFGDNVVRWIDGSETSYWFWLMSGKVEVLAAFGVLSVLALFAYWLRLGRVLKTSN
Ga0194009_1013031Ga0194009_10130312F001488MARLELTLNFPKSFEIKTFSVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSTVISLQNNLSINFFDMWIYEIYINKISTHNKFLNQKSQNLEPDEYITIKLAYGSSVSQEKK
Ga0194009_1014081Ga0194009_10140811F012457LTMMIKDLEMSKDLDRDALSAVRGGSNSITQGGVYAPVANVNDGFSFGSPTSIVSAPVNAPSAVLNDNDLHLKLANKTANVLGSLGTVVLQ
Ga0194009_1015320Ga0194009_10153202F024001LGIAAPAWRGAKTQEYLDLPDFRNAARRDASASKM
Ga0194009_1015373Ga0194009_10153731F073262VGVATQSLALQSATNTMGANLNASLNRPKALATLQDKCPMLVASLLAACEVATAADLPLHWSKVHATLKPAEWAACHARALDTAGSEIDKPAPLIPPPVASDLGNGRFATSSAHNPNEGMSTFHIRPSCMPSRQEHQDCNKTFESLVQGVGVASFKAQHVALINNKFELPQSTEEFRGYINGYQVLLRAFLGVHSHLCVAHEALAKDVDCIMTTIVNMCLDENGRRQICTLILAWT
Ga0194009_1017065Ga0194009_10170652F039151MLHTKHITLTNATEQTLFTIPTGYTIHIVYIFIANHGGSTNQVSLWWETGGVDQMYFFDGTSIGSGNKEIIGGQNDNGIFVLHNGDVVKTQASSSTGQMEVAVTFQLLERSAAFNNFNGS
Ga0194009_1019894Ga0194009_10198941F063712ESKHEEKHFRETVLPSGKIDAATTQGKADVGETPTAETLGSLARRVLSSSRHAESRELARVVWELLARRSGAK
Ga0194009_1021179Ga0194009_10211792F085722CYALLVIGLNGCSNPHKEAARASTEASKAEASVHNEKAKILEDYRKCLSKNKSNEQACESYKKALDSM
Ga0194009_1022862Ga0194009_10228622F026012PLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEVYINKVSTHNKFMSQKSQNLEPGEYITIKLAYGSSVSQEKK
Ga0194009_1024555Ga0194009_10245551F005815KEIIMTMKVTRLTTYWTIDEAATAIDFLDRLRDALWETYGEQIIKMHREAYDNRFQDINQCELGFDDDIPF
Ga0194009_1024966Ga0194009_10249662F092076SGTPTTVTIIDHIQNVLNDPDFDPKYNSIIIFEENTHIAGFPKDEIKTIRNILDGYAQQRTGRNWAVVAPNERQETFLKLNLELISPVKFNIRIFQSEEDALNWIKGR
Ga0194009_1025090Ga0194009_10250901F008424SMETKVNKLERLLYLTLIAGICFFTGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKRDDLERIIYGNKR
Ga0194009_1026937Ga0194009_10269371F023596MSDKSIQAVLIVGACAIALVFVKLMFDMSRSMGEMTAYISTISQDVSHMQQDMRALNESMLRMEKSLHGIGQAFSQGSEQFRQMSPGGMMQQVFPDGGQRKR
Ga0194009_1028479Ga0194009_10284791F090408MLASGYGLLLFHTDDDKQLAVLGSSPGAIGVKTFAGTATLPLLAVTVGPAGADPTSDVVGFLARTEGKYSVPVVARAGAREERGSLILSDDGAIDGLAVRSEDGAWASLAWEDVLAVSDAEIAPLWFTVDPQTGEYETNEGVATAVSEVSVGFIDLDYTSRLSLVLSATDVAGNTTVTSSPLE
Ga0194009_1031200Ga0194009_10312001F086821TVLRSTPGAAVFGRDMLFDVPYLADWTEIGRRRQKLVDRDTERKNRLRVDYDYTVGQKVTLKSDGILRKSEDKNTGPYVITQVHTNGTVRIQRGSVSERLNIRRIDPYFE
Ga0194009_1032255Ga0194009_10322551F080062MQLTLPKILWFVAALGLAWGINQWRQQAAAHGLEAAQEGDRDAAESWVDRALRESQCELHEASDYLAAEATRQYVRRPGYVETFVDKLYAGGA
Ga0194009_1034364Ga0194009_10343642F012874MPAKAGIQNYLKTLDSRLRGNDAKGRFKTFYETINIQSSFVIPL
Ga0194009_1040667Ga0194009_10406671F070125ALHAYRDDSERLFGLVASLANLLDRDLVIETMESVLGITAVHDGDCIIFDDLAIRFGSDGRVKSVFRTIDGSGSDGARANPGDSNG
Ga0194009_1041781Ga0194009_10417812F000331PGDVADFLNDAAWAVRSTYHTVLKASPGAAIFGRDMLFDVPFLADWNKVGDYRQRQTDRNTARENKSRVEWDYAVGDKVLLVKDGILRKAETLYEKEPWTVSQVHTNGTIRIQRGTKSERLNIRRVTPFFEK
Ga0194009_1042304Ga0194009_10423041F008223MGLIDRLFSRKPPRPTAVEGASRIVERFATATSMGIDREDLARYPVKQRKVMAFHFGAIEYLAREFQLDETQMLSVFVVFIDTYFVMPITETGSISERVQGFYDKPEEREYLEAGSDVCRRWHEDDERRAP
Ga0194009_1043295Ga0194009_10432951F073262IEAARSHSNNHLEGLQAPVGIATQPSAPQSATNTMGTNLNASLNRPKATATLQDKCLMLIALVLVVCKVATTADLPVCWSMVHATLKATEWAAHHANALDSAGSEMNKPAPVTSPPLAQDAGNGRFAASSANNLTEGMSIFCIRPSCMPRRRNTSTATGCLRCLFKEWAQLHLKRNRWH
Ga0194009_1043873Ga0194009_10438731F005564MHKVFIGLMVIFFLGDPSLQTLAWLGEMKLYIVAAAVAMVSIPFVISQLDG
Ga0194009_1044678Ga0194009_10446782F000200MIKVFDFRCTNGHTFEDFVDGNTTSSRCGCGANATKIVSATQHILDGASGDFPGRHMKWVREHEKAGQTTRESQ
Ga0194009_1051949Ga0194009_10519492F047065MTDLLNKFSEAAKVVSSSKTHMWECVNRAYVDHLSDISTDILPEEIQIFYDSIKLRITSVEVLGHIDNDEASYIANDIMYMADVISSGLRKP
Ga0194009_1054269Ga0194009_10542692F069741FDVDQLTRLSRTEQAQRLEEAERQIDDVQRAAANDPDSLSWIDQQRQYLVDMQHLIFEC
Ga0194009_1056038Ga0194009_10560381F042909MVDLINFIGNLNLGTFIVIWTSTIFSVIFIFLLLFSVSQMNKETIKISKKVKIL
Ga0194009_1057617Ga0194009_10576172F031452LSPEQQAVRKYGFSEIKASGVPTVYHVGDVVNLPYASGEISSIEAIGLAWAAFSSGVVPE
Ga0194009_1057635Ga0194009_10576351F058634MRYLSALATTVMLASALAGCSSSSDQSESPAGIGNVDMAVTLATPPSGPNEQIDTVDVSLYCEGIDPVLGVPRPAQSSPETFTINVSTSQGPEPYNTIGLFEKQGLPAGPCHFEFFAVSNTGNTECTGNLSVVISTDSTTQGEVVLACIHTPRY
Ga0194009_1058591Ga0194009_10585912F026012YSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKFQHLEPSEYITIKLAYGSNVSQEKK
Ga0194009_1058804Ga0194009_10588042F061862MKGKLNMQDDETMWYENDAPVQEYLDRELFRKAAIAEKDPKTVRFSWLEIMKKSFDIK
Ga0194009_1059271Ga0194009_10592711F004928MAQVLHSIDIQPDPTVEIVVHITETLGEQQREDLVTALEDNGGITTAEFCPLRYHLMLVRYDRDMYSSQDVL
Ga0194009_1059561Ga0194009_10595612F004052MRILSTMFQLAITALLFACDQQNNASEVDPKLGRECFEGHRAALPPGTQYEGIEKLVENRLTIKIMNGVDVVTLDCRLNPD
Ga0194009_1060702Ga0194009_10607021F041204MRDTFIEPRQQGRYAVPQAVLVNWNGVDVPEELKTLKQGRYVLVPLDEPPELTEEQGVGLEAALESVRAGQGLSRDEADAKPKANRLP

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