NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019107

3300019107: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002041 (ERX1782217-ERR1711949)



Overview

Basic Information
IMG/M Taxon OID3300019107 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0217103 | Ga0193400
Sample NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002041 (ERX1782217-ERR1711949)
Sequencing StatusPermanent Draft
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size43569192
Sequencing Scaffolds22
Novel Protein Genes26
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota17
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus1
Not Available1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Pacific Ocean: TARA_124
CoordinatesLat. (o)-9.1463Long. (o)-140.515Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000048Metagenome / Metatranscriptome3365Y
F000073Metagenome / Metatranscriptome2639Y
F000276Metatranscriptome1390Y
F000809Metagenome / Metatranscriptome882Y
F000879Metagenome / Metatranscriptome850Y
F001255Metatranscriptome736N
F002056Metagenome / Metatranscriptome598Y
F004175Metagenome / Metatranscriptome449Y
F006742Metatranscriptome365N
F032301Metagenome / Metatranscriptome180N
F033816Metatranscriptome176N
F047103Metagenome / Metatranscriptome150Y
F050387Metatranscriptome145Y
F056299Metatranscriptome137N
F059484Metagenome / Metatranscriptome134N
F059627Metatranscriptome133N
F073585Metatranscriptome120N
F075646Metagenome / Metatranscriptome118Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193400_1000999All Organisms → cellular organisms → Eukaryota1573Open in IMG/M
Ga0193400_1001001All Organisms → cellular organisms → Eukaryota1573Open in IMG/M
Ga0193400_1001002All Organisms → cellular organisms → Eukaryota1573Open in IMG/M
Ga0193400_1001004All Organisms → cellular organisms → Eukaryota1573Open in IMG/M
Ga0193400_1001005All Organisms → cellular organisms → Eukaryota1573Open in IMG/M
Ga0193400_1001165All Organisms → cellular organisms → Eukaryota1482Open in IMG/M
Ga0193400_1001914All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda1215Open in IMG/M
Ga0193400_1002705All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus1052Open in IMG/M
Ga0193400_1002999All Organisms → cellular organisms → Eukaryota1009Open in IMG/M
Ga0193400_1004145All Organisms → cellular organisms → Eukaryota874Open in IMG/M
Ga0193400_1004211All Organisms → cellular organisms → Eukaryota868Open in IMG/M
Ga0193400_1005318Not Available782Open in IMG/M
Ga0193400_1007993All Organisms → cellular organisms → Eukaryota648Open in IMG/M
Ga0193400_1009686All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis594Open in IMG/M
Ga0193400_1010920All Organisms → cellular organisms → Eukaryota563Open in IMG/M
Ga0193400_1011147All Organisms → cellular organisms → Eukaryota557Open in IMG/M
Ga0193400_1011241All Organisms → cellular organisms → Eukaryota555Open in IMG/M
Ga0193400_1011545All Organisms → cellular organisms → Eukaryota549Open in IMG/M
Ga0193400_1011974All Organisms → cellular organisms → Eukaryota540Open in IMG/M
Ga0193400_1012457All Organisms → cellular organisms → Eukaryota530Open in IMG/M
Ga0193400_1013815All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea507Open in IMG/M
Ga0193400_1014178All Organisms → cellular organisms → Eukaryota500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193400_1000999Ga0193400_10009992F032301LSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCYEKLLGHNFDRRAKSS
Ga0193400_1001001Ga0193400_10010012F032301LSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCWKKPYGHNFQISALKLNQRYFVYIKIPLIQGQ
Ga0193400_1001002Ga0193400_10010021F032301LSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCNEKLGGHNFDFRAKSS
Ga0193400_1001004Ga0193400_10010041F032301LSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCYEKPSGHNFDFKAKSS
Ga0193400_1001005Ga0193400_10010051F032301VASKLSPQQADGFFYQSDMKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCNEKLGGHNFDFRAKSS
Ga0193400_1001165Ga0193400_10011652F047103MGTLFALLFGRAFDKMGKKANICPKLTKNAYFGPILAVFGPKILIFMGVSKSFGTNITENHFGNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193400_1001914Ga0193400_10019141F033816EEGEGRFLYFNSSSTATSLTLLGALILLGVIFYLVYVGGLLAPAAGSYSNYQRYGQDYGQYYGQARSSDMGYDFNAVNILQWISMLQEVYEKFDYNDVDCQKLLICEVLRDEESFGDVSRRLQGGFELAKYLEVLNMPDEFRELLDEYMDASERSLGQKECAEFFQCPYSLKESVKRNFSGNSL
Ga0193400_1002705Ga0193400_10027051F050387VDFSQATRTADGRLCVVKEESVETLAKDPVLECKHKDVEKCHYTYITFFKPAQEETCEENFEKSCQITFKQEAVKETIRKCYRPLEKVCNGQGAQECRTVYESSCSTRYIDQGQGKFVGDTKCEKQPVEICGAGCVSREGAEECHDKQVDTLVDVPEETCDLNPQKTCRLVTKLVPSLKPKQECTTVPQETCSLRFTQPKRLSKPLRTEWCLDEEEAAEAADTYVTRDGRVFNI
Ga0193400_1002999Ga0193400_10029991F032301MKIREKWKFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLPARSWEMPVKCELPAKIGRCNKKLLGHNFDRRAKSS
Ga0193400_1004145Ga0193400_10041451F059627MPILAAPPPAPVTAKKTRPSWDSFLAHSKVPQGHTDELLTWLAKVQQKKASVRANHRRDRDLRVEAMLEAARVSAQAELEAKQRSRLARWRGLHQDQLLSPPSSPEQETEHEAADSALCDCESCVLCARHKSSMYGKCYCNMIFSPRPVFMDFTSPLSATDAFSDDTTSIEADNFLASLGGKRKSEDDQLTSYKRARA
Ga0193400_1004211Ga0193400_10042111F006742MLRFLTIAAVAICASASDGMMKKIHQDMMVFNSMSACWGKGNMVYFKVAMKEAMESCMQENHSGLLKPANPILSLLNQNANTLPFPVNNNNPFQSLPAPAPSNNPFKSSNLNLGAWQNLWGRNKREATEGLLQPTEEDFKEFLMDFEDFKGDVASKMGNLTCVLKKMNALDDNLQINMKEYTEDFWSKVDLSQTMAGEDPEWRNMLITGYKDCYDIARSWPQSTLNRNPLMKVFGRHMVFFKCARKEEAKCCGMACANDMLTTLYGSNDAF
Ga0193400_1005318Ga0193400_10053181F000879MKALLVCSVLVAATSAQYLGYPYALGSPLTYTYTPHVVKPVIKEVEVPYDVVSYAVKETGCVNSFNLPVPCAQEGEARRKRAADEEAAAEAPAAAPVLAYAGLPYAYGGLGYPYSYGLPYAYPQVQVAEPTVTEVEVPQLKYVPVEKKIELLPACHNGLGFPVPCA
Ga0193400_1006977Ga0193400_10069771F000073ASAAAREVVEADKKAAVALPASGKCSIPAKELKLEGTFVDFMSKNSKLRDMVETGKGNLQWERDIPPAALSNLENLAKSDFKTNLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPEANKKEVEGLIEQKAMTLDLYEILGTCTWVPPK
Ga0193400_1007993Ga0193400_10079931F075646MTFSPLIIWAKGPFFFEQLFSVVARTWLGIKSERLFLDPKFQFLAKKSDFCHTTPIFVDDPFLALDMTVNFPPWKRFFDFPFRSYSCFRKKIRLTAQKVFPPPTCGSSVCQ
Ga0193400_1008679Ga0193400_10086791F000048AAEGASLKMTTHTESDAEVAALKERYNKVKAVSDAWVKKCEVLVKEWVLLDNTVTELNSWVAKDKSEEGENQFSLEKMESTLGELKNIFKQKEKLVEGL
Ga0193400_1009310Ga0193400_10093101F000073ASAAAREVVEADKKAAVALPASGKCSIPAKELKLEGTFVDFMSKNSKLRDMVETGKGNLQWERDIPPAALSNLENLAKSDFKTNLGKIIHDIYQTAHLMFSDMPQGDHKKRAKYRFASKTLMRILPGGVKTEVEGLIEQKKISLDLYEILGVCTWVEPK
Ga0193400_1009686Ga0193400_10096861F056299PYTESECTTEYKQDCQYEWRGHGNDKVWAPIEGTCQNVPYDECRDVAKTHAKQVAYQECNDVPEQKCVSVPKQTCVTVPDQICKTEPLTECQDVPRQQCHSEHKRFPVRISRQAPKKVCDEVHSTAPLAAAAVHQAPVHHQASPSVQDLLNYGVPAVPTQTVPQIIDARDKQKLQSAAKDDRIVFA
Ga0193400_1010920Ga0193400_10109201F001255TWGPLPQRKHCLIMLQVLFLAGLASAVPAPEADPLLYTGHPLTYAVPYVTYHAPKCETEFEEVKGQSCVTKPVTECNDVEVPSHKIVTEDVCQNVTTAECTHSTYSAGVYYGKREAEADPQVLVGAVPAVVPYHNCVNKVTEVCYPVQKVEPTTITEKSCLLKGEVECTEVVVATIPKVTCTHEEHT
Ga0193400_1011147Ga0193400_10111472F047103LVGHWTKCAKNGNIWPKMTKNADFGPNLAVFGPKILIFMGVSKSFGTNITENHFGNLSALFFGQALDQMGQKCRYLAQNASFGPNLAVFGPKIQFFGGRE
Ga0193400_1011241Ga0193400_10112411F059484FFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVLVARSWVSAKKWGPLAKL
Ga0193400_1011545Ga0193400_10115451F073585GALPKSRSEAEKFFLKNNFKISATGSKRNFDIDLSWKATKPDWDFSTPESLKIDINAKGESPRWGNWMLSRDASFKVENKVIQADVSGKAHFKGGLLATSTPIVTEVHMKYLIPQRDLQGKFSKMINGKEYSINFPDGFGVMPQIKMGQ
Ga0193400_1011974Ga0193400_10119741F000276KNRCVAGDTAYKCAVFFGNLTESRPLTWIGALPDALSKASSPEEAKAILGADVTEESFEDLPNCDDVTANARCYAILDGQKDIKLDSCDRNLINTRGSQTIGNFLCGQVRRWLRRSASFKTSGIRDLRLPFYYSACNRDWTPITDGENDLYFDEALCCNPDGSYYNCDGSETNDQC
Ga0193400_1012457Ga0193400_10124571F004175TDSCLVNLIDVTLACEDANSKLVEVVTVADVDSEDHVGNSLLQIWELTFGPSDFEHKGWSRF
Ga0193400_1013815Ga0193400_10138151F002056RYQMNPGKDALFRGEFEVIKELVADLGADGEASKRECDKVIDKNGPAKTGGTGIKQLRENIAESKLSYEIMDDAAQVFLKSKIMDNIAKYFSLIVFTSYMRQAADLARNSLSDEEKNKNALSGGKTAIPGDQLKITKTFVQYMEEKNNLRNMVEEGKGRLQWERDIPA
Ga0193400_1013862Ga0193400_10138621F000809SPVPSLTPASTCTCPCTMDLDLEEWCLVRNKMLRFHFNISEDIKAVVQSIRAEMRPELIPLAEEKANFGKLVKTAVREMWSLEYEVDGLQSQFAESIGTLDLDNIDVDFIEDMMLKSKPLQGILNDIRGRQIKKLEEVKKTYGEAIKELEAMIVERPPKGLEEDIPAE
Ga0193400_1014178Ga0193400_10141781F000276AVFFGNLTESRPLTWIGALPDALSKASSPEEAKAILGADVTEESFEDLPNCDDVTANARCYAILDGQKDIKLDSCDRNLINTRGSQTIGNFLCGQVRRWLRRSASFKTSGIRDLRLPFYYSACNRDWTPITDGENDLYFDEALCCNPDGSYYNCDGSETNDQC
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