Sample 3300018895

Basic Information
IMG/M Taxon OID	3300018895 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0217188 \| Ga0193547
Sample Name	Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408504-ERR1336912)
Sequencing Status	Permanent Draft
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117946 | Gp0217188 | Ga0193547

Sample Name

Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408504-ERR1336912)

Sequencing Status

Permanent Draft

Sequencing Center

Canada's Michael Smith Genome Sciences Centre

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	172731184
Sequencing Scaffolds	29
Novel Protein Genes	30
Associated Families	27

Dataset Contents

Total Genome Size

172731184

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	3
Not Available	18
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	2
All Organisms → cellular organisms → Eukaryota	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium

All Organisms → cellular organisms → Eukaryota

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Ecosystem Assignment (GOLD)

Name

Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	North Atlantic Ocean: TARA_011
Coordinates	Lat. (^o)	41.6686	Long. (^o)	2.7996	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

North Atlantic Ocean: TARA_011

Coordinates

Lat. (^o)

41.6686

Long. (^o)

2.7996

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005911	Metagenome / Metatranscriptome	386	Y
F007722	Metagenome / Metatranscriptome	346	Y
F008558	Metagenome / Metatranscriptome	331	Y
F008886	Metagenome / Metatranscriptome	326	Y
F014683	Metagenome / Metatranscriptome	261	Y
F017822	Metagenome / Metatranscriptome	238	Y
F019653	Metagenome / Metatranscriptome	228	Y
F020468	Metagenome / Metatranscriptome	224	Y
F023489	Metagenome / Metatranscriptome	210	Y
F023874	Metagenome / Metatranscriptome	208	Y
F024207	Metagenome / Metatranscriptome	207	Y
F026579	Metagenome / Metatranscriptome	197	N
F029759	Metagenome / Metatranscriptome	187	Y
F036486	Metagenome / Metatranscriptome	170	N
F042354	Metagenome / Metatranscriptome	158	Y
F047691	Metagenome / Metatranscriptome	149	Y
F061875	Metagenome / Metatranscriptome	131	N
F068862	Metatranscriptome	124	N
F071278	Metagenome / Metatranscriptome	122	N
F078536	Metagenome / Metatranscriptome	116	Y
F084308	Metagenome / Metatranscriptome	112	Y
F085817	Metagenome / Metatranscriptome	111	Y
F095250	Metagenome / Metatranscriptome	105	N
F097478	Metagenome / Metatranscriptome	104	Y
F098216	Metagenome / Metatranscriptome	104	N
F103871	Metagenome / Metatranscriptome	101	Y
F105327	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193547_10004460	All Organisms → Viruses → Predicted Viral	1429	Open in IMG/M
Ga0193547_10009051	All Organisms → Viruses → Predicted Viral	1039	Open in IMG/M
Ga0193547_10009117	Not Available	1036	Open in IMG/M
Ga0193547_10009352	All Organisms → Viruses → Predicted Viral	1023	Open in IMG/M
Ga0193547_10010060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	992	Open in IMG/M
Ga0193547_10010696	Not Available	964	Open in IMG/M
Ga0193547_10010975	Not Available	951	Open in IMG/M
Ga0193547_10013803	Not Available	846	Open in IMG/M
Ga0193547_10014287	Not Available	832	Open in IMG/M
Ga0193547_10016102	Not Available	783	Open in IMG/M
Ga0193547_10017469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	750	Open in IMG/M
Ga0193547_10019143	Not Available	714	Open in IMG/M
Ga0193547_10019596	All Organisms → cellular organisms → Eukaryota	706	Open in IMG/M
Ga0193547_10024410	Not Available	631	Open in IMG/M
Ga0193547_10025136	Not Available	621	Open in IMG/M
Ga0193547_10025912	Not Available	612	Open in IMG/M
Ga0193547_10026407	Not Available	606	Open in IMG/M
Ga0193547_10026480	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	605	Open in IMG/M
Ga0193547_10026536	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
Ga0193547_10027253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	596	Open in IMG/M
Ga0193547_10028697	Not Available	580	Open in IMG/M
Ga0193547_10028991	Not Available	577	Open in IMG/M
Ga0193547_10030121	Not Available	566	Open in IMG/M
Ga0193547_10034367	Not Available	528	Open in IMG/M
Ga0193547_10035801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	517	Open in IMG/M
Ga0193547_10037238	Not Available	507	Open in IMG/M
Ga0193547_10037409	Not Available	506	Open in IMG/M
Ga0193547_10037553	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	505	Open in IMG/M
Ga0193547_10038130	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193547_10004460	Ga0193547_100044603	F085817	MSSNLKVNKRSKKSFSVTRFSGFDGSRVQITTARDHRKEISVSDQFFNSVNLNKQEAQDLVETLMGFINGTDNECFDSVPLVEAKKQWMDDFNKVRPGTSRIVKRDNGDVVVERPTFSKLLQENQKKLSQNDLNYFNSRRMA
Ga0193547_10009051	Ga0193547_100090511	F084308	MTAWAERIVELLPNTTKTREVIEKRGKYYYVEKEPRINPTHGMIITLRDEDGYRFSTSVKNIRVPQPVD
Ga0193547_10009117	Ga0193547_100091172	F020468	MPLVKKRITVADCATSDQILTGTTYEYVGPGTRLVVAAAADAAGTQMNFNVNNAEFARDAEVSEKVTGEPFGWKGGYVMNDMITTAAERNRPIITFTNNSGASRTIDVAVFIGG
Ga0193547_10009352	Ga0193547_100093523	F105327	MSNYIRTINMDGPAGNAMNLMATAKHMAKEHGENGSKIVKEMMDTGEYDILVQTLLFYFGDYLRLVNSSGKDITDNYIGADNG
Ga0193547_10010060	Ga0193547_100100602	F097478	MIHKISQMCDKVSVIYNKSMELRRLKYDTPKESRDENQINFLVQDIQALCREIANDTTTYTKT
Ga0193547_10010696	Ga0193547_100106962	F029759	GAFWALLGLNLMVFGWALYAHARVRANEKVLESLDWETLANLTGEVGAMKRSLQKVNNRINGMTAADPVQMLQELPKLQNATQPNGRIGG
Ga0193547_10010975	Ga0193547_100109752	F026579	MRINLIVLILALMAISVTQPSFSETISDVKIIFADKEGEGKPTDDEEPDCE
Ga0193547_10013803	Ga0193547_100138032	F103871	MVQIPGLILDYSKKKPPAKAVVYQTYDALAGFIKRPQVALTRRS
Ga0193547_10014287	Ga0193547_100142872	F036486	GIMFNLIRHFFNNHNKEKQMARSKQFVVYTREFQKGNVNSKIGVFVEEANKYMVNGSVNGGAIKFANLKMSRPTATRKLVDAGYDFNVRVLGTSNLQGAMAMKEQLVSLLSNTNKTVINTVAA
Ga0193547_10016102	Ga0193547_100161023	F019653	MTTLVANYVFSPLSGLWSSLDRYTQMIGYSRAATELARMGMIKESKRCMMD
Ga0193547_10017469	Ga0193547_100174692	F097478	MNITKGWEMIHKISQMCDKVSVIYNKSMELRRLKYDTPKESRDENQINFLVQDIQALCREIANDTTTYTKT
Ga0193547_10019143	Ga0193547_100191431	F005911	MLKNKILNFLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGAGDEDQIEAPVNELFHNGNFIKLSEMVKKAVIIVSDDPTATARKGYDIGYDTENSGVLIKFAAVDGNVIQPDQGDADDTIVADVHLFVNLAGTADTDSNSPYVDGTPFYYILMDSTTAGLAASLETIDSTIYASGILATNG
Ga0193547_10019596	Ga0193547_100195961	F068862	AERSVHISTNTDVDGLNGLNLNWQVPFKVDDYVVGFRYKLNELKKYPETLFAKKIFDVADGEATVDADVNVDDKSLSANVKWVSDKLVDGMKTTLRLNGNSNDKITSVGAEVNKNVDGRDVELKGTYNLADSRLDANGKVVVDKTTAEVSYNSGDEDIRLQLSHDLDDHNTPKGSYSTKTGQVAYGWTRKWEGGELDGTYHPDNGGRAVLEWTDKGNQGDWKTRAEVPLANNEI
Ga0193547_10024410	Ga0193547_100244101	F014683	GFTYTLSVECASEGNADLDAVENILDLHFQDLVMDDTFVNELDERQSVTIQVVPNFGQK
Ga0193547_10025136	Ga0193547_100251361	F042354	GILEDFMKTLRTLTALFFLFLSSNVAFSQSTVNAGLSYGSFNYDISGTKYTGDGGVVNLDGKISSSINYSLSISDGKFDDVVYNNSEGSVTYMVLPNIGVDLMGSQIKLGTVQETDTSLGVSYNLYASSLDMKVFVGSDINNYGKFYTYGTKLNLSVTQGSRLTLSYKTEDRKQKATTMDARFVYDLTSNLGLNLGYKSTETKNAA
Ga0193547_10025912	Ga0193547_100259122	F061875	GSMKAEKVFESMVDGLSENQVERFKVLSEKLDVEDLEDYTSNLSVIKESFFSEGKIAAPKAEDVEEDEIILEEQEVNKPASDYTSINALVEAFNNKK
Ga0193547_10026407	Ga0193547_100264071	F071278	ASMQANKLDGTNVEDDIEDSLDPLFHNGSFITLRQMITASIIIAQSDPTTTSERGAKTPYDLDNSGVKIKFANQSDAVIAPSATNRAISERSSLAKVYDLHLFVNLAGTTDIIAARNNGPYATGAPFFYIVMATDTETGRSDSITDSLLTVNLTQFPTGILATNQGGPQAETSVILPQDF
Ga0193547_10026480	Ga0193547_100264802	F007722	RVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQSNVTDIRKNNIGG
Ga0193547_10026536	Ga0193547_100265362	F008558	MFNNVGHPIEGFAILECHPDQEPIIVATHQCVGNAEEHKMVLNEMAEGTDFTFVVKETFGCMIETV
Ga0193547_10027253	Ga0193547_100272532	F023874	GEKAREVVDSPILVPTFKKDDYCYVDGFGDVIESNLSWNKEEMRKKVGHLFLFMKGAWQYSDNGIDWEPADEALPMPREVA
Ga0193547_10028697	Ga0193547_100286971	F047691	MKCEQGDLAKVIHSVRPENIGKIVLVKEYIGKYKQNDTFDFRGVSCMCPVTDHYWWIEATGLKNQFGDSPKAYIADSWLEPIRPETGKKSATYVVKDKEVERQAA
Ga0193547_10028991	Ga0193547_100289911	F098216	VPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTYSISNYMKENGVGGVLETNHCKNKQGRI
Ga0193547_10030121	Ga0193547_100301212	F023489	GVDSGVTTSRCGCGANATKMVSAPQCVLEGHSGDFPGRHMKWVREHEAAGRKKSPQ
Ga0193547_10034367	Ga0193547_100343671	F042354	GILEDFMKTLRTLTALFFLFLSSNVAFSQSTVNAGLSYGSFNYDISGTKYTGDGGVVNLDGKISSSINYSLSISDGKFDDVVYNNSEGSVTYMVLPNIGVDLMGSQIKLATVQETDTSLGVSYNVYASSLVMKVFVGSDINNYGKFYTYGTKVNLGVTQGSRLTLSYKTEDRKQK
Ga0193547_10035801	Ga0193547_100358011	F017822	LIPGRIEIPKLNPLGCRLRVFIYSLIPLLSLLFIGCAGSPTTVISPYSWDNPYWKAENYESKNPETIIVTEGDLERNYREVARIYTEGGPKDKEEAFDLMRSRLSSFGADAVIKVRKKKNKNYK
Ga0193547_10037238	Ga0193547_100372382	F008886	GEAFGWRGGYVLNDMITTGQVRNRPVITFTNNDSNAATIDVAVFIGG
Ga0193547_10037409	Ga0193547_100374091	F098216	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISNYMTDNGVEGVLETNHCKNKQG
Ga0193547_10037553	Ga0193547_100375531	F095250	MPLVQKTLTLSAGATSDNILANTNYEFVDGNVRLRV
Ga0193547_10037553	Ga0193547_100375532	F024207	TTGFGTGVALNALTGTGMSREKPVLTQSRRNKARVRQLVNFMGIEGASNFLSQASGQNVTANDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRAPMRRASSTTLIKN
Ga0193547_10038130	Ga0193547_100381301	F078536	GLTFEINSDPDNEDYGKESGWCLWLKQDLERPTAADITRVTVDCKENPLLCEIGNDEGKDSGVVLRRQRDWQVLWDAPENYPDVEYTEELEPRDVYDEQNITYDFDTQTFNIGIHDWEATGVDKSLTWQQVRDVRDQELHDTDAKVGQTDAPDSIQTAWLEYRQKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300018895: Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408504-ERR1336912)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences