| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300018562 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117946 | Gp0216983 | Ga0193150 |
| Sample Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000700 (ERX1782139-ERR1712148) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 28186267 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → deep chlorophyll maximum layer → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mediterranean Sea: TARA_022 | |||||||
| Coordinates | Lat. (o) | 39.8607 | Long. (o) | 17.4105 | Alt. (m) | N/A | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000021 | Metagenome / Metatranscriptome | 6082 | Y |
| F025213 | Metatranscriptome | 202 | Y |
| F063744 | Metatranscriptome | 129 | N |
| F088751 | Metagenome / Metatranscriptome | 109 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0193150_1000579 | Not Available | 1343 | Open in IMG/M |
| Ga0193150_1003569 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis | 722 | Open in IMG/M |
| Ga0193150_1006661 | All Organisms → cellular organisms → Eukaryota | 570 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0193150_1000579 | Ga0193150_10005792 | F088751 | MPIFGPKCQFWAKFGRFWAPNPIFWGQGVKILVPSYRDSNETPFSCXKHXSVRLQLAARGENVLFXPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKISVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPP |
| Ga0193150_1001792 | Ga0193150_10017921 | F000021 | KNNADKIIDLNGTKKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKSKIMDNIHKYFYIIVFAAYMRDAAAKAREAVDAEKKAAVALPASGKCSIPAKELKIEGSFVDFVAKVGGLHELIDTGKGNLQWERDIPPAALSNLEGLANSDFKSNLGKIIHDIYQTAHLMFADMPQGDHKKRAKYRFASKTLMRILPPAAKTEVEGLIEKKKISLDLYEILGVCTWVEPK |
| Ga0193150_1003569 | Ga0193150_10035691 | F025213 | MEKTDAEKIMEEILSMQAGLNPDQQADANEEAEMIIRAIMQDEVDNSVYSKMADDLEAASKRVKKRKVKKVKESASEISA |
| Ga0193150_1006661 | Ga0193150_10066611 | F063744 | SAAPQIVPYDHVEIAAEPYVHQEIPAEPYVHEEPELTPEALGIINRSQRPQAVPTAAPVVAPQQFAGPVQQFVPQQQQFAQFAAPQQFAQFAAPVQGVQGVWTGGCYNNLGEGVPCRQKF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |