| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300018551 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129055 | Gp0214180 | Ga0188852 |
| Sample Name | Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p8 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 6772759 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metatranscriptome Of Marine Microbial Communities From Baltic Sea |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Baltic Sea | |||||||
| Coordinates | Lat. (o) | 56.1664 | Long. (o) | 16.378218 | Alt. (m) | N/A | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008184 | Metagenome / Metatranscriptome | 337 | Y |
| F011255 | Metagenome / Metatranscriptome | 293 | Y |
| F056178 | Metagenome / Metatranscriptome | 138 | Y |
| F063493 | Metagenome / Metatranscriptome | 129 | N |
| F097458 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0188852_100561 | Not Available | 960 | Open in IMG/M |
| Ga0188852_100589 | Not Available | 941 | Open in IMG/M |
| Ga0188852_101154 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 704 | Open in IMG/M |
| Ga0188852_102167 | Not Available | 518 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0188852_100561 | Ga0188852_1005611 | F097458 | PPIFLSFTFAALLPRRGIFALAHTHDISAIYKIPIDSRYGLLGSPILFDTHTLVVRRQSL |
| Ga0188852_100589 | Ga0188852_1005891 | F063493 | MQTIFLIVLAVAIVGYLVMNREGLRWDRGFAGFRPAVTGVITEGNLEITGNPVEDVAIKALMIKKIVDATTEEIFRTKGLKMFPIETIFIQVFDSPDKIKELKQKRPDVYDAYVKFLQARDKDAVLTRNGDGTEQEQLARTALINYLEALKRDQDYNTVPDNVPATYRCRP |
| Ga0188852_101056 | Ga0188852_1010562 | F011255 | MAVTHTWSVSDQLQTRTQDGLSEVVFSVVWRLNSEETVDGTTYKASSANQISLNTDNLDPATYTAFADLTKAQVVGWAKSTIDANAAEGQGVVCAEWEAGHNRNIAKQINPPTAVETAPWVTAAPV |
| Ga0188852_101154 | Ga0188852_1011541 | F008184 | MAYTDLFNEAIDDLTASLTAVSGLRVVNDATKIVPNCVFIDAPSFTTMAGNGNVIRLEFPIRVIGSGPAGLPILRSILGIVASVLGSPIIVMAG |
| Ga0188852_102167 | Ga0188852_1021673 | F056178 | MSGWHYQIMRHTADSGEDYLAIHEFYTMHDKGTGWTHKPVPIEADSLDEMREALTAILQDLERHGVRD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |