| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300018543 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129055 | Gp0214148 | Ga0188820 |
| Sample Name | Metatranscriptome of freshwater lake microbial communities from Lake Tornetrask, Sweden - GS667_0p8 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 4141802 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 9 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage MEDS5 group | 1 |
| Not Available | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metatranscriptome Of Marine Microbial Communities From Baltic Sea |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Lake Tornetrask | |||||||
| Coordinates | Lat. (o) | 68.355835 | Long. (o) | 18.821667 | Alt. (m) | N/A | Depth (m) | .3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003182 | Metagenome / Metatranscriptome | 502 | Y |
| F007749 | Metagenome / Metatranscriptome | 345 | Y |
| F027191 | Metagenome / Metatranscriptome | 195 | Y |
| F031485 | Metagenome / Metatranscriptome | 182 | Y |
| F056178 | Metagenome / Metatranscriptome | 138 | Y |
| F063493 | Metagenome / Metatranscriptome | 129 | N |
| F066259 | Metagenome / Metatranscriptome | 127 | Y |
| F087069 | Metagenome / Metatranscriptome | 110 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0188820_100316 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 998 | Open in IMG/M |
| Ga0188820_100344 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage MEDS5 group | 966 | Open in IMG/M |
| Ga0188820_100491 | Not Available | 819 | Open in IMG/M |
| Ga0188820_100609 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 748 | Open in IMG/M |
| Ga0188820_100808 | Not Available | 650 | Open in IMG/M |
| Ga0188820_101382 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 509 | Open in IMG/M |
| Ga0188820_101395 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 507 | Open in IMG/M |
| Ga0188820_101419 | All Organisms → cellular organisms → Eukaryota → Sar | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0188820_100316 | Ga0188820_1003161 | F007749 | MTYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYTDSLTTSPGGDATLGTLMYCAALWRSRGSIENTYATFDGMGTATQQSLTPIVKQLLAIPRPQVA |
| Ga0188820_100344 | Ga0188820_1003443 | F031485 | MAKIDKEVPTPGVGGSYLFDPKTGSLTLITESPAPTDNGTDSQEVPSSKD |
| Ga0188820_100491 | Ga0188820_1004912 | F063493 | MQTIFLIVLAVAIVGYLVMNREGLRWDRGFAGFRPAVTGVITEGNLEITGNPVEDVAIKALMIKKIVDATTEEIFRTKGLKMFPIETIFIQVFDSPDKIKELKQKRPDVYDAYVKFLQARDKDAVLTRNGDGTEQEQLARTALINYLEALKRDQDYNTVPDNVPATYRCRPIVSR |
| Ga0188820_100609 | Ga0188820_1006092 | F003182 | MHILEFDCSICLNLYGKAKQNHGLKKGKELTEHEWFAQCMSCGTFGIKIVDDARIGELSQ |
| Ga0188820_100646 | Ga0188820_1006462 | F087069 | MRSKSMMGVQTVIPFKSKKTRQGTGLHSKPRKGKKKYRGQGK |
| Ga0188820_100808 | Ga0188820_1008083 | F056178 | MSGWHYQIMRHTADSGEDYLAIHEFYTMHDKGTGWTHKPVPIEADSLDEMREALTAILQDLERHGVRDAKTGEVVQNG |
| Ga0188820_101382 | Ga0188820_1013821 | F007749 | MTYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYTDSLTTSPGGDATLGTLMYCAALWRSRGSIENTYATFDGMGTATQQSLTPIVKQLLGIPRPAVA |
| Ga0188820_101395 | Ga0188820_1013953 | F066259 | MAIEKGLYEMPEGIDGELMGEMGEEMTPDAMVGIDVVTEGDLPVMV |
| Ga0188820_101419 | Ga0188820_1014191 | F027191 | VVRFLISPKKKKVKIEVNKIMNPAFLLGTAFNIAYWHRKYHSGTICKGVSNPQASNALSGCEKEEIPK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |