NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300018501

3300018501: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_026 - TARA_S400007202 (ERX1782147-ERR1712052)



Overview

Basic Information
IMG/M Taxon OID3300018501 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0216992 | Ga0193169
Sample NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_026 - TARA_S400007202 (ERX1782147-ERR1712052)
Sequencing StatusPermanent Draft
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size10800371
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
Not Available2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationMediterranean Sea: TARA_026
CoordinatesLat. (o)38.4735Long. (o)20.1718Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001293Metagenome / Metatranscriptome729Y
F003503Metatranscriptome482N
F004175Metagenome / Metatranscriptome449Y
F022575Metatranscriptome213Y
F034058Metagenome / Metatranscriptome175Y
F059484Metagenome / Metatranscriptome134N
F088751Metagenome / Metatranscriptome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193169_100664All Organisms → cellular organisms → Eukaryota972Open in IMG/M
Ga0193169_100667All Organisms → cellular organisms → Eukaryota971Open in IMG/M
Ga0193169_100770All Organisms → cellular organisms → Eukaryota915Open in IMG/M
Ga0193169_100907All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae849Open in IMG/M
Ga0193169_101516All Organisms → cellular organisms → Eukaryota690Open in IMG/M
Ga0193169_101840Not Available629Open in IMG/M
Ga0193169_102133Not Available587Open in IMG/M
Ga0193169_102425All Organisms → cellular organisms → Eukaryota559Open in IMG/M
Ga0193169_102508All Organisms → cellular organisms → Eukaryota551Open in IMG/M
Ga0193169_102831All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193169_100664Ga0193169_1006641F059484VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVLVARSWVSATKWGPLAKL
Ga0193169_100667Ga0193169_1006672F059484VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVSVGRSWMSAKKWGPLAKLLGVAKKSHSHNFRI
Ga0193169_100770Ga0193169_1007701F059484VASKLWVHEPDTFFLEAAREISEKWNFFVNRSVPENFGRENFSGQVPTESLRTQDSENVYERWVQQIFDPVLVARSWVSATKWGPLAKLLGVKKKCISQNLRI
Ga0193169_100907Ga0193169_1009073F001293MIRNSLICKLINVQASMKENNEKKIKNCDEISKLTKAPPKDTAALDKRSVLAKVNSQGSG
Ga0193169_100999Ga0193169_1009991F022575MQATATSNNNNKYKLINKINRYIKVILDPXEPNNVNKRCPATILAANRIDKVNGRIIFLTDSIITIIGIKNLGVPIGTKXQNKLLYXKIIDKIILPNHMGKAKFNVNDICLVLVKI
Ga0193169_101516Ga0193169_1015161F003503FSPIEVDLACTAGSPLGAKLASAFETCLGGEEALKPEEVGVSERRRRRPNKGRKCPTVEQIKAKMGEGMEGDWCVLSQLGWIDENGNEKNETTAADLMSLNAEVLAELDESAMATCAQERVEMIGKMMEKKHKRCAKKFSEEDKAELTEMALKIQGYNCFKEMFHSACQKSVKNQIYAFFQAQAMAAASTDSPTTSAQGTTV
Ga0193169_101840Ga0193169_1018401F088751XPQNLDIWGQKSIFXIVIAIFVDGANDHYTRGYNFPIGTTPKKISVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRPFFSLNNFFRSWPEHGES
Ga0193169_102133Ga0193169_1021331F088751XPQNLDIWGQKSIFXIVIAIFVDGANDHYTRGYNFPIGTTPKKISVSELGVIFWGSPLFLAVFGHSHVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKXHFPPXLFGQRPFFSLNNFFRLWPEHGYGQKVGPLFWAQNFSFWPKNPIFAIRPQFSLMTHF
Ga0193169_102425Ga0193169_1024251F004175VTLACKDANLKLVEVVTVADVDDENRVGNSLLQIWTFGPKATLLFRL
Ga0193169_102508Ga0193169_1025081F004175LIDVTLACEDANSKLVEVVTVADVDSEDHVGNSLLQIWELTFDPKTKLFSDFELKGWSRF
Ga0193169_102831Ga0193169_1028311F034058DEIPKEDCAKLLESLADPEDEDGFFPYTPFLDKLCGK
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