NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017281

3300017281: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low N, at 18 C, 32 psu salinity and 243 ?mol photons light - Heterosigma akashiwo CCMP 2393 (MMETSP0294)



Overview

Basic Information
IMG/M Taxon OID3300017281 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128947 | Gp0211798 | Ga0186086
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low N, at 18 C, 32 psu salinity and 243 ?mol photons light - Heterosigma akashiwo CCMP 2393 (MMETSP0294)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31586269
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000917Metatranscriptome834Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186086_113546All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales836Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186086_113546Ga0186086_1135461F000917PKAAALGCVEALVREAKRMEGEQPTTVGYGITSDPIRGCSYDSLFAAVGQSIKEPWRVIGVDQTGCSVEDCNGYTLRKMRLSATGENVIERITINEEIGTVTYNKCDASGRPGDVERVLALHTPLRLEFYERSARSGLRVDWKAPYDMARETFSNMVQLALKIETSASDVVGYGLASKPATGVSQDALWKAMLYSMRNPAECGLKVDSVSVRDMRGYMQRSMRLLEKPGSPTVIDNVRVVESAQEITYRPVINNVESEEERVFALRTEPLRFEMFCRH

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