NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017228

3300017228: Metatranscriptome of marine eukaryotic communities from unknown location in CHM medium, at 25 C, 0 psu salinity and 642 ?mol photons light - Cryptomonas paramecium CCAP 977/2A (MMETSP0038_2)



Overview

Basic Information
IMG/M Taxon OID3300017228 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211908 | Ga0186196
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in CHM medium, at 25 C, 0 psu salinity and 642 ?mol photons light - Cryptomonas paramecium CCAP 977/2A (MMETSP0038_2)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size38677207
Sequencing Scaffolds16
Novel Protein Genes16
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae13
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010032Metagenome / Metatranscriptome309N
F012351Metagenome / Metatranscriptome281Y
F020015Metagenome / Metatranscriptome226N
F021541Metagenome / Metatranscriptome218N
F025760Metagenome / Metatranscriptome200Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F036560Metagenome / Metatranscriptome169N
F084315Metagenome / Metatranscriptome112N
F087277Metagenome / Metatranscriptome110N
F101269Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186196_102213All Organisms → cellular organisms → Eukaryota → Cryptophyceae2070Open in IMG/M
Ga0186196_104360All Organisms → cellular organisms → Eukaryota → Cryptophyceae1552Open in IMG/M
Ga0186196_104641All Organisms → cellular organisms → Eukaryota → Cryptophyceae1506Open in IMG/M
Ga0186196_107082All Organisms → cellular organisms → Eukaryota → Cryptophyceae1230Open in IMG/M
Ga0186196_108965All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121089Open in IMG/M
Ga0186196_109352All Organisms → cellular organisms → Eukaryota → Cryptophyceae1065Open in IMG/M
Ga0186196_112296All Organisms → cellular organisms → Eukaryota → Cryptophyceae909Open in IMG/M
Ga0186196_112366All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales906Open in IMG/M
Ga0186196_114520All Organisms → cellular organisms → Eukaryota → Cryptophyceae824Open in IMG/M
Ga0186196_116278All Organisms → cellular organisms → Eukaryota → Cryptophyceae766Open in IMG/M
Ga0186196_120271All Organisms → cellular organisms → Eukaryota → Cryptophyceae658Open in IMG/M
Ga0186196_121027All Organisms → cellular organisms → Eukaryota → Cryptophyceae639Open in IMG/M
Ga0186196_123085All Organisms → cellular organisms → Eukaryota → Cryptophyceae593Open in IMG/M
Ga0186196_123904All Organisms → cellular organisms → Eukaryota → Cryptophyceae574Open in IMG/M
Ga0186196_123986All Organisms → cellular organisms → Eukaryota → Cryptophyceae572Open in IMG/M
Ga0186196_125865All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata533Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186196_102213Ga0186196_1022132F084315MRPSIMISVAAVGLLCVIIAAVSIQMSNRDNAAPSELMTEKLVLFKMAPPPEPWSPPENLWMYWGDAPNKRFGHSGDNIRHLVKLGRMAGGEYRDPHFLESFASQTFRDLSESCCTAMLVAPMKHNMPIWNSYSNVAQRLRNYIANGNHLIFTGGSLVSMEFINTYFWYNIEPTSGEAGYWDDTGYGNWSPGPFRKLVDKNLPWVFKMTPDTLYQDHTSVQSVLLASLPDGARVLYMSPKSSPVFQIRFCQRLSDKHGEAPIKTLPRDCYRYAAKGYPCSCGTITYIGYDWHMDQTSEAWDKVCFATRLTTHLTLSLPRLPLFTIPLGSVSPGYDRPFCS
Ga0186196_104360Ga0186196_1043602F010032VSSSSRLVNTLVASALLACVGVVVWYSQENQSTDLFQSSALDTQQTTELSFLQTSAFVDQVYMYAGLAVDNKHETGFIAKEIRKHNYQTVIRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYTAAGNNVIFLGNYVSVQFMNDVYGFQLMDDYQNGPYYRNDRNVRNTPYQFLPSRIEQASIETYAVNTRSIPPGGKSMLDTLGATVAFVVRYDLGTVCWIGYNYNTPFHADQWTRVLHAAIDM
Ga0186196_104641Ga0186196_1046412F021541MCLSLNLLSFQMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186196_107082Ga0186196_1070821F084315MRPSIMISVAAVGLLCVIIAAVSIQMSNRDNAAPSELMTEKLVLFKMAPPPEPWSPPENLWMYWGDAPNKRFGHSGDNIRHLVKLGRMAGGEYRDPHFLESFASQTFRDLSESCCTAMLVAPMKHNMPIWNSYSNVAQRLRNYIANGNHLIFTGGSLVSMEFINTYFWYNIEPTSGEAGYWDDTGYGNWSPGPFRKLVDKNLPWVFKMTPDTLYQDHTSVQSVLLASLPDGARVLYMSPKSSPVFQIRFCQRLSDKHGEAPIKTLPRDCYRYAAKGYPCSCGTITYIGYDWHMDQTSEAWDKVMLAAVEFQADSEVSATKSPNCYEPPKKVIDTTEPLPPPKCN
Ga0186196_108965Ga0186196_1089651F021541VVFCELTFCFVSEMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186196_109352Ga0186196_1093521F032673QGQVTLHKMVVVVDYGAVPVEHEKNEISASSPRKSNRAIFAVVASIAAFALVAMVYQVSMEDDGRATLAALKAQEINDILSKAKHMSTSQLQAEVDALEALKVKRVRTTSLSEDTEANPMGGILENVPATIVAPVPGPPDFNGVSAVVARLPNIGFAPSMLEEKGFESRGTFTVRQSRAGESFYLRIYGKLNHNLRCTIRGYRNLMGDFTGNTIYTGFKLTFTGKSQIHTSHIPRGIQGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186196_112296Ga0186196_1122961F020015MTAGSKGGHNQSFAKRVFLASTVAVAVLCLGVLVVERDDDLMGSALGISYYAVTKPPAFNFNRFIENVWIYDGRSASRDEEGFIEKLARRHHYKLQIHHLNTFKDNEFRAALFSQDIHCIIFPPLSHFPGIGELAKKDLRGYVSAGNNIVFVGSYEWLSIMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMSRLEQPDGSIYSVKVDSIPMEGACMFDTMGACVVFFTKYNLGTIVYIAFAYDTPYGIGHWDQILHAAMMM
Ga0186196_112366Ga0186196_1123661F036560LRADVLLSWQVFETLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186196_114520Ga0186196_1145201F087277DGEVRRLRTAFFAVASAAAIFAVVICVLSSSSNSNTNGPISASSERWLESGRSSIDMFHVARSPMQKYELRGDPLPHQVHYYSNIGDRLPVLADEERETRQTFQELVQLGHTCVVLMRRAIWSVDPTVFEPQYDLQVRLDSIHTGLKQLAAQTGVYLTNPPVVQVDESVFDEAADDISRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKISSQLTELVNIARHRFLEVADSIDSMRVNIETIHDDRRRR
Ga0186196_116278Ga0186196_1162781F025760MTLSRYRYDTRLGGNWYKADEPWGAYLQTEGNPAVTIHPYENDPSSGSFNPQAATTWTPVDWGSWPNYNVHGYGIY
Ga0186196_120271Ga0186196_1202711F026478VKSEDAMKGRTFPLLLLSNIVLCFLLLCCDAKPKRKQVSVNDEDVIKAKEFALAEIIKLTDSYRDMKINKVISAETARSAFADGTNYFLKLELECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEDDAAADEADAAEAAKDEL
Ga0186196_121027Ga0186196_1210271F101269SPSKMLRNQIEEQLFCIAAGKPGGGTFLPHCFPDKKAAQGTAKINGWGPFFANDSQGYIAYGVGNWDGQGSGHNFAADVWHPSHGYINNCDGGRSHWACDYRQA
Ga0186196_123085Ga0186196_1230851F025760MMFLVPLSALRNDPYSMFDTKASGNWYKADEPWGAFLQTDGNPAVSIHPYENDASSGSFNPQAQTTWVPVDWGSWPNYNVHGYGIY
Ga0186196_123904Ga0186196_1239041F025760APQGSSALYQSASKMMIVPLASMLYPSPNGGRNDPYSMYDTRLGGNWYKADEPWGAYLQTEGNPAVTIHPYENDPSSGSFNPQAATTWTPVDWGSWPNYNVHGYGIY
Ga0186196_123986Ga0186196_1239861F032673QVDEGAVTLAAMNAQEMQDLMSKAKHMSTAQLQQAVNMLEKDAKLNSVRTTSLVASEDTEANPSGAVLEKVPSTIVAPVPGPPDFNGASAVVARLPNIGFAPSLLEEKGFETRGTFTVRQSRAGESFYLRIYGKLNHNMRCTIRGYRNLMGDFTGNTIYTGFKLTYTGKSQIQTGHIPRGITGEFDIMTC
Ga0186196_125865Ga0186196_1258651F012351RRDTETEMFADLHHLHHVMSALEQGGSVSAASTVSGTAAGSADIYFGAEHINADNVAQNWLSDDQVSNMAAGVNGPVDRNEGMYNGYTAVKTYWSDTIVMDNLRGGDATGLATPGAQEVTSTAAGVSGTGNTVHSYSGDTFY
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