NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017220

3300017220: Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 615 ?mol photons light - Goniomonas pacifica CCMP 1869 (MMETSP0107_2)



Overview

Basic Information
IMG/M Taxon OID3300017220 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211845 | Ga0186133
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 615 ?mol photons light - Goniomonas pacifica CCMP 1869 (MMETSP0107_2)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size38848367
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae3
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005668Metagenome / Metatranscriptome393Y
F026197Metagenome / Metatranscriptome198Y
F026478Metagenome / Metatranscriptome197Y
F036560Metagenome / Metatranscriptome169N
F086665Metagenome / Metatranscriptome110N
F092088Metagenome / Metatranscriptome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186133_111863All Organisms → cellular organisms → Eukaryota1085Open in IMG/M
Ga0186133_113453All Organisms → cellular organisms → Eukaryota → Cryptophyceae1010Open in IMG/M
Ga0186133_123714All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales619Open in IMG/M
Ga0186133_125212All Organisms → cellular organisms → Eukaryota → Cryptophyceae573Open in IMG/M
Ga0186133_125723All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712558Open in IMG/M
Ga0186133_126532All Organisms → cellular organisms → Eukaryota → Cryptophyceae535Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186133_111863Ga0186133_1118631F026197SSMQSQWLLSLVLIGSAAALPTLVDEATMCRGGHCDDLDMQYKRVSVSQPGFQWDDAGGYCGSWASQRAFLTKGAWISQQQVRDHTKPCGGHDSEILSCNIDEAWTNLKIDYEGFDYKSTPLPQTAAYAKWLKKQLAAGHAVAWMILWSGQDYPIYDLTPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVLHYNDAGVKTIHRAISSLAGKWAGPGQPADCGEYSYCISNPYGFGWAIKGFKDGNSSRAAPASLHVEPWLSEPDTRSGKAPEALKGKVTATELTAGSTYDIYRWDTVAQAFTYDAQFKKASFTATSDTYEYTDDESFMSNGTTYYRVVLAE
Ga0186133_113453Ga0186133_1134532F086665VENRKNEPFICRLIKRHHFSTAIHEFFSLRDEPLRAVLWTQYYHVVVFPTFVSYPDISKIGKTDIRAYVAAGNNVVFLGGYLTLQVMNDIFGFSLRDDFKEGPYYRNDRNVRDTPFQFLPSRINEPSPRVFGAMSRSLPPGGRSLYDSLGNSVVFYISYDLGTVVYVGFQYDTPFNIERWVKVLHGAMEM
Ga0186133_123714Ga0186133_1237141F036560RQKKQQAMFQSLYGKHAAALYAQAGDFNKTARFYYMKAEDAYYLANAQASYDDWRRARDQWDYFYHRK
Ga0186133_125212Ga0186133_1252121F026478AIPSMAITRTLVVLAVLFVAIATAQKPKRKQVSADEEEVQKAVQFAHQELVKLSDSYRDLQIVKVQSAETARSAFADGTNYFLKLDIEVVSKCAAPLSPASTCRRGKYKGTNEVIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDPEEGKKDEL
Ga0186133_125723Ga0186133_1257231F005668MLQKLFDLEDYAGTYRETRNAYLKAANELKLATGPYKAARDAYVAATATYTKSLYE
Ga0186133_126532Ga0186133_1265321F092088LERQSNSSFWTPYLDILPRKYNNIMYLTDAELRKLLRRPGCENTHNLGVQMRRTFNNFHRQYHQLVKENYPQLQFTREELLHSFNVCVVNGWEGAGPHQGMLVPFSDIATHRRESAQKASNRGFLSAAKEYQAGEELTFDYGLLNDAVLAYYGQPTPDCRGLRR
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