NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017200

3300017200: Metatranscriptome of marine eukaryotic communities from unknown location in JM medium, at 23 C, 0 psu salinity and 285 ?mol photons light - Cryptomonas curvata CCAP 979/52 (MMETSP1050)



Overview

Basic Information
IMG/M Taxon OID3300017200 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211829 | Ga0186117
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in JM medium, at 23 C, 0 psu salinity and 285 ?mol photons light - Cryptomonas curvata CCAP 979/52 (MMETSP1050)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size34455691
Sequencing Scaffolds30
Novel Protein Genes31
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata12
All Organisms → cellular organisms → Eukaryota → Cryptophyceae10
Not Available1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27124
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010032Metagenome / Metatranscriptome309N
F012351Metagenome / Metatranscriptome281Y
F019282Metagenome / Metatranscriptome230Y
F020015Metagenome / Metatranscriptome226N
F025760Metagenome / Metatranscriptome200Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F034819Metagenome / Metatranscriptome173Y
F036560Metagenome / Metatranscriptome169N
F041012Metagenome / Metatranscriptome160Y
F044900Metagenome / Metatranscriptome153Y
F069742Metagenome / Metatranscriptome123Y
F084315Metagenome / Metatranscriptome112N
F087277Metagenome / Metatranscriptome110N
F091436Metagenome / Metatranscriptome107N
F092159Metagenome / Metatranscriptome107N
F096602Metagenome / Metatranscriptome104N
F096687Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186117_102184All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata2022Open in IMG/M
Ga0186117_103054All Organisms → cellular organisms → Eukaryota → Cryptophyceae1720Open in IMG/M
Ga0186117_104120Not Available1483Open in IMG/M
Ga0186117_105547All Organisms → cellular organisms → Eukaryota → Cryptophyceae1276Open in IMG/M
Ga0186117_108244All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata1040Open in IMG/M
Ga0186117_108401All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata1031Open in IMG/M
Ga0186117_109401All Organisms → cellular organisms → Eukaryota → Cryptophyceae967Open in IMG/M
Ga0186117_109562All Organisms → cellular organisms → Eukaryota → Cryptophyceae958Open in IMG/M
Ga0186117_110949All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata886Open in IMG/M
Ga0186117_111606All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata855Open in IMG/M
Ga0186117_112347All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata824Open in IMG/M
Ga0186117_112450All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales820Open in IMG/M
Ga0186117_112566All Organisms → cellular organisms → Eukaryota → Cryptophyceae816Open in IMG/M
Ga0186117_112792All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata807Open in IMG/M
Ga0186117_113077All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata796Open in IMG/M
Ga0186117_113501All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712780Open in IMG/M
Ga0186117_115690All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata709Open in IMG/M
Ga0186117_116775All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta676Open in IMG/M
Ga0186117_117521All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712653Open in IMG/M
Ga0186117_118642All Organisms → cellular organisms → Eukaryota → Cryptophyceae621Open in IMG/M
Ga0186117_119527All Organisms → cellular organisms → Eukaryota → Cryptophyceae597Open in IMG/M
Ga0186117_120091All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata584Open in IMG/M
Ga0186117_120564All Organisms → cellular organisms → Eukaryota → Cryptophyceae571Open in IMG/M
Ga0186117_121373All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales551Open in IMG/M
Ga0186117_122304All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata528Open in IMG/M
Ga0186117_122706All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712519Open in IMG/M
Ga0186117_122952All Organisms → cellular organisms → Eukaryota → Cryptophyceae513Open in IMG/M
Ga0186117_123089All Organisms → cellular organisms → Eukaryota → Cryptophyceae510Open in IMG/M
Ga0186117_123125All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712509Open in IMG/M
Ga0186117_123407All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186117_102184Ga0186117_1021843F091436MKGYDALDCTLISLGSAGHRLGQLSELCFLPDKVARFLFEFHASDYKGLGLPVIPSSASSGTIHKLLKTPHVCI
Ga0186117_103054Ga0186117_1030541F084315VKAMEKATLLECPAKTRGRFSRPSVMIAVTAVSALCILVAAVSFQRMAAVSSAPDELLTEKLVLFKMAPPPEPWSPPENLWMYWGDAPNKRFGHSGDNLRHLVRLGRIGGGEYRDPHFLESFKTATFRDLSEQCCTALLIAPMKHNMPVWNAYSNIAQRLRNYVANGNHIIFTGGSLVSMEFINTYFWYNIEPTSTGSGGHFDGSGYGNWSPGPWRKLVDKNLPWVFKMTPDTLYQDHTSVQTAQLSSLPDGARVIYMSPQSSPVFQIRFCQRLSDKHGEAPIKTLPRDCWRYAAKGYPCSCGTLTYVGYDWHYDQTSEAWDKVMLGAVEFQSDSEVSATNSPNCYQAPKKVYDPTDPLPPPKCST
Ga0186117_104120Ga0186117_1041201F041012MEDAGIIKLYDPSPIPCLYVAPVANMVGRVPLFPLYLAGNSTPTIPHRFSKHKGSGFPMGSADSAAADGRRGSNTYEVNTWLWLFGQGKPRLGGLTVEETALKKSAKREEQAKRSVETRRRRKAARSSSQ
Ga0186117_105547Ga0186117_1055471F020015APFMALGSASVVAPVMIGSKSSEWQGYAKRVFLVSLAAVAIICIGVVVAERKSSNQNDALGGAYYAVTKPPAFNFNRFIENTWIYDGRSASRDEEGFIEKLARRHHYKLQIHHLNTFKDNEFRASLFSQDIHCIIFPPLSHFPGIGELAKKDLRGYVSAGNNVVFIGSYEWLSVMNDIFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMSRLEQPDGSIYSVKIDSIPMEGACMFDTMGACVVFFTKYNLGTIVYIAFDYDTPYGIGHWDQILHAAMMM
Ga0186117_108244Ga0186117_1082441F044900VRLDINLLKPSRIEFADQPAPSLSLPEGHYSPPKWLEYVYRTAHPVLRWLPTKLAEWIGENLQDELEFPDKADQRAEPGSGWTPAELNHILQTHVVDGTLTTFGCVEWESNLCRGVMRARCYPFDMPKHRFHGMNPKDTILVIPPYPYCIEEERNDVPLEDCWY
Ga0186117_108401Ga0186117_1084011F034819VLVVPPYPYCIEEDRHAVDLEDCWTARPQLFFSCHLRPNGGRKPTDGRHKIGPDDLRYNLIFFSTFKELTLPIKGPMEDAGVVKLYEPSPTQCLYVAHAQNMVGRIPLMPCFLDGNATPTIPHKYSKNKNSCFLAGCADAAAEDGRRGSNVYEVNPWLWQFGSGKPHLGGLTIEETSDRQDASRKASDKRRKETREGRRGS
Ga0186117_109401Ga0186117_1094011F010032LRMVSSSSRLVNTLAVSVILGCVAFVAWRAQPSSQSVDELFQAKALETQQTTELSFLQTSAFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVIRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYTAAGNNVVFIGNYVAVQFMNDVYGFQLMDDYQNGPYYRNDRNVRNTPYQFLPSRIEQASIETYAVNTRSIPPGGKSMLDTLGATVAFVVRYDLGTVCWIGYNYNTPFHADQWTRVLHAAIDM
Ga0186117_109562Ga0186117_1095621F087277ITTMLNDGEVRRLRTAFFAVASAAAIFAAVICILSSTGSSNAAAPISGTERWLESGRASIDMFHVARSPMQKYELRGDPLPRQVHYYSNVGDRLPVLADEERETRQTFQELVQLGHTCVVLMRRAIWSIDPTVFEPQYDLQVRLDSIHTGLKQLAAQTGVYLTNPPVVQVDESVFDEAADDISRFRKLVERIPEMHNAQFYWIVQYNIIRTELRKISSQLTEVVNVAKHRFLEVADSIDSMRVNIETIHDDRRR
Ga0186117_110346Ga0186117_1103462F036560MLENLYGKHAAALYAQAADFNKTARFYYMKAEDAYYLANAQASYDDWRRARRQWDYFYRYVSGFVVCSFIYF
Ga0186117_110949Ga0186117_1109491F012351MFADLHHLHQFISLEQGGAVTATSWVGGTNAGEADIYFGATHINADNVNESWLSDDQASDFNAGVNGPIDRNEGAYNGYAAVKAFWADTTNMDNLRGGDATGLATPGAQEISIAADGTVSGFGNTVHTNSADSFY
Ga0186117_111606Ga0186117_1116062F036560MLENLYGKHAAALYAQAADFNKTARFYYMKAEDAYYLANAQASYDDWRRARRQWDYFYRR
Ga0186117_112347Ga0186117_1123471F096602LNVKTDFDLQGDGLVWYARPQLFFNCTLCPTGAKGFSGSHKEVSLVYFSTFEPIELTPDSIMQRAGVPMLYDSASNPRLPCLYICPVANVLGRAPLIPCFIGGNSHPTIPYRFKDDRRLGHASADTQRDRGNGSRLYEVHIWMWRYGRGRARTVSIAEAERIRSERLSESRIRAAETRKRRSEAAAAGGAEGGSRA
Ga0186117_112450Ga0186117_1124501F036560MLENLYGKHAAALYAQAADFNKTARFYYMKAEDAYYLANAQASYDDWRRARRQWDYFYRCDHRALNMLY
Ga0186117_112566Ga0186117_1125661F032673QNMVLLLDYGAVPIDQVKSEPSANQPGRHSRKIVAILGCIAAFAMIAMAYQFSAEDDGTATLAALKSQEINDILSKAKHMSTEQLQAEVSALEAKTQRPLRTTSLVASEDTAANPMGGVLENVPATIVAPVPGPPDFNGASAVVARLPNIGFAPSMLEEKGFESRGTFTVRQSRAGESFYLRIYGKLNHNIRCTIRGYRNLMGDFTGNTIYTGFKLIYNGKSQIHTGHIPRGIQGEFDIMTCRDMGNGEVQYFRIRYD
Ga0186117_112792Ga0186117_1127921F096602MISYVISYLISYCEQDCVVLLAPFPNNPNPVESFNVKTDFDLQGDGLVWYARPQLFFNCTLCPTGAKGFSGSHKEVSLVYFSTFEPIELTPDSIMQRAGVPMLYDSASNPRLPCLYICPVANVLGRAPLIPCFIGGNSHPTIPYRFKDDRRLGHASADTQRDRGNGSRLYEVHIWMWRYGRGRARTVSIAEAERIRSERLSESRIRAAETRKRRSEAAAAGGAEGGSRA
Ga0186117_113077Ga0186117_1130772F012351VLTVVLRQMFADLHHLHQFVSLEQGGSVTAASWVGGTGAGEANIYFGATHITADNVHESWLSDDQVSDMNAGVNGPIDRNEGAYNGYAAVKAFWADTTNMDNLRGGDATGLATPGAQEVTSDADGVSGFGNTVHSYSGDSFY
Ga0186117_113501Ga0186117_1135011F096687MQFEVLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186117_115690Ga0186117_1156902F012351MVQVLTVVLRQMFADLHHLHQFVSLEQGGSVTAASWVGGTGAGEANIYFGATHITADNVHESWLSDDQVSDMNAGVNGPIDRNEGAYNGYAAVKAFWADTTNMDNLRGGDATGLATPGAQEVTSDADGVSGFGNTVHSYSGDSFY
Ga0186117_116775Ga0186117_1167751F092159VETGADVAPQQTSMLNRVVATTMPVQQTTMLNWANLSDRAQKVKGLNFCASQFVTEDEVKYCVAKLFSGDVKFATMADY
Ga0186117_117521Ga0186117_1175212F019282LADINTINTWAEPHNANGVTPNTIIDSNDEPPANNQQRIATRNY
Ga0186117_118642Ga0186117_1186422F019282MVLGRRMFSFLAELAPGYVIPDINTINTWAEPHNANGVTPNTIIDSNDEPAGNNQQRIIARNY
Ga0186117_119527Ga0186117_1195271F025760MFLVPLSALRNDPYSMFDTKATGNWYKADEPWGAFLQTDGNPAVTVHPYESDPSSGSFNPQAQTTWVPTDWSSWPNYNVHGYGIY
Ga0186117_120091Ga0186117_1200912F069742VYERKQEEQVFCVLHVESILGKLPVVPIGDTGTIQFSMRQHAQDFVGAAFDTIEGSGDGSRWWFINTWALSWAR
Ga0186117_120564Ga0186117_1205641F032673EDEGTVTLAAMNAQEMRDLLSNAKHMSTAQLQAAVSELESEKHGKSARTISLVASEDTAANPMGGVLENVPATIVAPVPGPPDFNGASAVVARLPNIGFAPSLLEEKGFESRGTFTVRQSRAGESFYLRIYGKLNHNIRCTVRGYRNLMGDFTGNTVYTGFKLIYNGKSQIQTGHIPRGITGEFDIMTCR
Ga0186117_121373Ga0186117_1213731F036560PRKLCRCSRMVFSHLQQTEELYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRSRRQWDYFYRRK
Ga0186117_122304Ga0186117_1223041F012351QMFADLHHLHQFISLEQGGSVSTVSTVSGTTAGEADIYFGAAHMNVDNVAEDWIDDDQVSDMSVGGNGPVTRNEGMYNAYTAIKAYWSDTINMDNLRGGDATGMATPGAMEVTSDSDGVSGAGNTVHTYSGDSFY
Ga0186117_122706Ga0186117_1227061F096687VEATMREILYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186117_122952Ga0186117_1229521F026478KMAPSSISRVALSALIVIVLAVSCSAKPKRKQVSIEDEDVIKARDFALAEIIKLTDSYRDMKINKVISAETARSAFADGTNYFLKMELECTSICAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDD
Ga0186117_123089Ga0186117_1230892F025760MHRFDTKATGNWYKADEPWGAFLQTDGNPAVTVHPYESDPSSGSFNPQAQTTWVPTDWSSWPNYNVHGYGIY
Ga0186117_123125Ga0186117_1231252F019282MFSLLRTTMLEYVPDINTINTWAEPHNANGVTPNTIIDSNDEPPANNQQRIATRNY
Ga0186117_123407Ga0186117_1234071F012351TMFADIHHLHQFMSLEQGGSVTAISTASGTAAGVSDTYFGAEHINADDASKAWMSDDQISDMAAGVNGPVDRNEGMYNAYAGVKAYWSDTTVMDNLRGGDATGLATPGAQEGVSEADGVSGFGNTVHSYSGETFY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.