NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017187

3300017187: Metatranscriptome of marine eukaryotic communities from Caribbean Sea in L1 medium with silica, 20 C, 21 psu salinity and 307 ?mol photons light - Thalassionema frauenfeldii CCMP 1798 (MMETSP0786)



Overview

Basic Information
IMG/M Taxon OID3300017187 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128947 | Gp0212184 | Ga0186472
Sample NameMetatranscriptome of marine eukaryotic communities from Caribbean Sea in L1 medium with silica, 20 C, 21 psu salinity and 307 ?mol photons light - Thalassionema frauenfeldii CCMP 1798 (MMETSP0786)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32770743
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCaribbean Sea
CoordinatesLat. (o)18.47Long. (o)-64.575Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082131Metagenome / Metatranscriptome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186472_103813All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris2253Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186472_103813Ga0186472_1038131F082131MFCDNQSTIKIINSWIPTERSWHIHIQFYALQDWKEIRQIAMTHIPGVINPADDLTKPLGWVLPSWHCSRLMGHYR

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