NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017165

3300017165: Metatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater and 400nM iron, 10.6uM silica, 25 C, 35 psu salinity and 146 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0972)



Overview

Basic Information
IMG/M Taxon OID3300017165 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211955 | Ga0186243
Sample NameMetatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater and 400nM iron, 10.6uM silica, 25 C, 35 psu salinity and 146 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0972)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32146771
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica7

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSargasso Sea
CoordinatesLat. (o)33.1833Long. (o)-65.25Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076756Metagenome / Metatranscriptome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186243_108919All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1275Open in IMG/M
Ga0186243_108978All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1268Open in IMG/M
Ga0186243_109472All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1214Open in IMG/M
Ga0186243_110991All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1060Open in IMG/M
Ga0186243_111529All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1006Open in IMG/M
Ga0186243_111591All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica999Open in IMG/M
Ga0186243_112182All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica947Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186243_108919Ga0186243_1089191F076756MSQAIAPIAPIENDEHEFMKSHLSVVSSALAISNFPVEVQGILTNAYDDDGDGHISTKELVEGARIKIRTEKYNRILWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEVPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSADVRPDQGLTLMTTQGDLVEWDLVDDAKKLSITLQDGTAWKTCMQCTECTAGNIYYTPDILDGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRECNSC
Ga0186243_108978Ga0186243_1089781F076756MDQDQKMEGLDNSNGGELDESDSQSVTVSELGMMNRVAGISKRMQNSRMSMVSATLTISDFPVEIQGILSEAFDPDGDGHISTDELVEGAKISIQTRKFNRMLWKGLAVAIFVVLALVGLNAGLTYGIVDANKDTEVQGRALMVREKGMDAEVPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRECNSC
Ga0186243_109472Ga0186243_1094721F076756MMSHKSAMSHVSSALAISNFPVEVQGILTNAYDDDGDGHISTDELVEGARIKMRTEKCNRILWRGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEVPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSADVRPDQGLTLMTTQGDLVEWDLVDDAKKLSITLQDGTAWKTCMQCTECTAGNIYYTPDILDGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRECNSC
Ga0186243_110991Ga0186243_1109912F076756MSQAIAPIAPIENDEHEFMKSHLSVVSSALAISNFPVEVQGILTNAYDDDGDGHISTKELVEGARIKIRTEKYNRILWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEVPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSR
Ga0186243_111529Ga0186243_1115291F076756MPEDTNDHEFMKSHLSVVSSALAISNFPVDVQGILSNAYDDDGDGHISTNELVEGARLKIRTEKCNSMLWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEVPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSADVRPDQGLTLMTTQGDLVEWDLVDDAKKLSITLQDGTAWKTCMQCTECTAGNIYYTPDILDGLDSFEAATGKEARRHLGTFSRRLQNGGRGDRECNSC
Ga0186243_111591Ga0186243_1115912F076756MMSHKSAMSHVSSALAISNFPVEVQGILTNAYDDDGDGHISTDELVEGARIKMRTEKCNRILWRGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEVPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSR
Ga0186243_112182Ga0186243_1121821F076756MPEDTNDHEFMKSHLSVVSSALAISNFPVDVQGILSNAYDDDGDGHISTNELVEGARLKIRTEKCNSMLWKGIGLAVVLVVALIGLNAGLTYGIIDANKDTEVQGRALMVREKGMDAEVPVATSNNEITVTLATLPFLPSSVVSHVENLAFSSEDGSVVYHRKVRSVDISPEKSLKLLTTEGDMVEWDLVDDAKKLSIALASGEDGTAWKMCVYCTECTAANVYSTPDILNGLDSFEAATGKEARRHLGTFSR
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