NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017164

3300017164: Metatranscriptome of marine eukaryotic communities from unknown location in H/2 medium with NH4Cl, at 23 C, 35 psu salinity and 289 ?mol photons light - Guillardia theta CCMP 2712 (MMETSP0046_2)



Overview

Basic Information
IMG/M Taxon OID3300017164 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211835 | Ga0186123
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in H/2 medium with NH4Cl, at 23 C, 35 psu salinity and 289 ?mol photons light - Guillardia theta CCMP 2712 (MMETSP0046_2)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size38485448
Sequencing Scaffolds24
Novel Protein Genes24
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae9
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27127
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae4
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Hanusia → Hanusia phi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010032Metagenome / Metatranscriptome309N
F011850Metagenome / Metatranscriptome286Y
F014152Metatranscriptome265N
F019282Metagenome / Metatranscriptome230Y
F019841Metagenome / Metatranscriptome227Y
F020015Metagenome / Metatranscriptome226N
F021541Metagenome / Metatranscriptome218N
F023110Metagenome / Metatranscriptome211Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F035324Metagenome / Metatranscriptome172N
F054914Metagenome / Metatranscriptome139N
F067806Metagenome / Metatranscriptome125N
F082776Metatranscriptome113N
F084315Metagenome / Metatranscriptome112N
F087277Metagenome / Metatranscriptome110N
F096687Metagenome / Metatranscriptome104N
F101267Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186123_101719All Organisms → cellular organisms → Eukaryota → Cryptophyceae3102Open in IMG/M
Ga0186123_105085All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27122064Open in IMG/M
Ga0186123_105182All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta2049Open in IMG/M
Ga0186123_106272All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1858Open in IMG/M
Ga0186123_106605All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1810Open in IMG/M
Ga0186123_108207All Organisms → cellular organisms → Eukaryota → Cryptophyceae1582Open in IMG/M
Ga0186123_108256All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta1578Open in IMG/M
Ga0186123_108352All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1565Open in IMG/M
Ga0186123_110604All Organisms → cellular organisms → Eukaryota → Cryptophyceae1328Open in IMG/M
Ga0186123_110951All Organisms → cellular organisms → Eukaryota → Cryptophyceae1296Open in IMG/M
Ga0186123_111180All Organisms → cellular organisms → Eukaryota → Cryptophyceae1275Open in IMG/M
Ga0186123_111659All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1232Open in IMG/M
Ga0186123_111755All Organisms → cellular organisms → Eukaryota → Cryptophyceae1223Open in IMG/M
Ga0186123_112881All Organisms → cellular organisms → Eukaryota1126Open in IMG/M
Ga0186123_113702All Organisms → cellular organisms → Eukaryota → Cryptophyceae1062Open in IMG/M
Ga0186123_114009All Organisms → cellular organisms → Eukaryota → Cryptophyceae1039Open in IMG/M
Ga0186123_117001All Organisms → cellular organisms → Eukaryota → Cryptophyceae818Open in IMG/M
Ga0186123_117792All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Hanusia → Hanusia phi768Open in IMG/M
Ga0186123_119101All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712688Open in IMG/M
Ga0186123_120300All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712619Open in IMG/M
Ga0186123_121386All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712559Open in IMG/M
Ga0186123_121651All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712545Open in IMG/M
Ga0186123_121896All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712532Open in IMG/M
Ga0186123_122037All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186123_101719Ga0186123_1017192F067806RMAGMKVGDMELGYGSFQVEGRSNWKRKAFLVAMGTAMTALMILLGLDQSHEISEPTRQTLSTQRLFAADNVAMNGGTSGVAASKGDASDFMNSADLGDYVDAIIGPAPSGLTEGGYKKRGSIAVSKIDAAGFYYLNVEGEPGHALECILQGSDGYHRHWKGYGQIYTGPIHEGNYGGKDYLQIQDLVTGEVEYFRFRFT
Ga0186123_105085Ga0186123_1050852F096687MFEALYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186123_105182Ga0186123_1051822F023110MMFKVLPIRSLDLAPWTWQSSWNSDMPSFFQGMPNGVYDNIYDDLDTSTVSYHTTEPVDPTEYQEHWLGDVIKIY
Ga0186123_106272Ga0186123_1062721F032673MMYAGIAVLACMAVIGMAFVSYDQVTSTSSWSSGAQLVDQDEGFWDDGSVTLAQLNKQEMNEILAKAKSMSTDQLRAEVAQLEADKRTRRTSLASKVRKQSLVVRGGQEDVAGNPEGGIIENVPPTVVAPVPGPPDFNGASAIIARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQVQTGHIPRGIVGEFDIMTCRDLNNGEVQYFRIRYD
Ga0186123_106605Ga0186123_1066051F032673MMYAGIAVLACMAVIGMAFVSYDQDEGFWDDGSVTLAQLNKQEMNEILAKAKSMSTDQLRAEVAQLEADKRTRRTSLASKVRKQSLVVRGGQEDVAGNPEGGIIENVPPTVVAPVPGPPDFNGASAIIARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQVQTGHIPRGIVGEFDIMTCRDLNNGEVQYFRIRYD
Ga0186123_108207Ga0186123_1082071F054914VRERLSLVFALIAAALVSCIGIIAYAKHSNALAPVETFQMTKLGTEYQVASALMKHATDIQFDENAPVPEKLADLAKAAEDEMKIDAEVMAQRR
Ga0186123_108256Ga0186123_1082562F026478ACLPKMRMDRRHTLALLLCTASLLVLLVSPALAAKPKRKKVSVDDEEVIKARDFALAEIIKLSDSYRDMKINKVISAETARSAFADGTNYFLKMELECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDEDDKAKDEL
Ga0186123_108352Ga0186123_1083523F035324GSPHVAGAMFQALAIFKDTNGLFIGDVSGAMHVCLAGEACGGTLLSNKSGGGSRTPYSHGVAGYFGLYGTGQFDGQSSGHDFYGTIYMPPTGFVNNCDGGRSHTYCDYRQQ
Ga0186123_110604Ga0186123_1106041F084315QARSRAMAWRSYGTAEEGGGRITGGRKTAAVVAALSFTAVAAVLCVIALTQSQDKKSELVDEKLVLFKMEPPPEPWSPPANLWMFWGQSPNKRFGHSGDNIRHLVKLGRLAGGEYRDPHFLFNFDSQTFRDLSESCCTTMLVAPMKNDMPIYNAESNVAQRLRNYVANGNHIVFTGGSLVSIEFINRYFYYNIEPESSSGTFKGSGYGNWSPGPFRKLITTDLPWVYKLTPDTLYQDHTSVQSMALRSLPSGTSVIYMTPKSSPVFLIKFCQRLSERHGEPPIKTVPKDCWRHAARGYPCSCGTISYIGYDWHYDQDAADWDKVCELGRTC
Ga0186123_110951Ga0186123_1109512F101267MVEADFLSLFFLFFVQPVVNRKQEVPPDFFQKCFMKGYLKTLPKKQKIWCMIHENNFYFMDNQDDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFVADDEEKALEWYEAALKASSRRN
Ga0186123_111180Ga0186123_1111801F084315QARSRAMAWRSYGTAEEGGGRITGGRKTAAVVAALSFTAVAAVLCVIALTQSQDKKSELVDEKLVLFKMEPPPEPWSPPANLWMFWGQSPNKRFGHSGDNIRHLVKLGRLAGGEYRDPHFLFNFDSQTFRDLSESCCTTMLVAPMKNDMPIYNAESNVAQRLRNYVANGNHIVFTGGSLVSIEFINRYFYYNIEPESSSGTFKGSGYGNWSPGPFRKLITTDLPWVYKLTPDTLYQDHTSVQSMALRSLPSGTSVIYMTPKSSPVFLIKFCQRLSERHGEPPIKTVPKDCWRHAARGYPCSCGTISYIGYDWHYDQDAADWDKVMLAAVEYQSDPDESTTFSPNCKQPPRVIEDPHAPKNPPMCGKL
Ga0186123_111659Ga0186123_1116591F010032EGGAAAMMVTERSLNTASCSLALVMMCMAVWHMQNPSHFGRRSALAQTPAQQTTELSFLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYTAAGNNVVFLGNYVAVQFMNDVYGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRVEQASIETYAVKSRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYIGYNYNTPFHADQWTRVLHCAIDM
Ga0186123_111755Ga0186123_1117552F101267MGCCSSRAPGQHEWQANVPGSYKQNPVPVVNRKQEVPPDFFQKCFMKGYLKTLPKKQKIWCMIHENNFYFMDNQDDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFVADDEEKALEWYEAALKASSRRN
Ga0186123_112881Ga0186123_1128812F014152NEREHNSVSRQIAFTLAISALALTVCCALIASADLKGNRVALYGLGSGEEQDADNSMVTTFETFAGQDEYMEELLGDEYYQELFKEIADSEPISEAVDEVKVAVDEAKNEHKTLQMFAEGADAPLS
Ga0186123_113702Ga0186123_1137022F020015QSSISGAIEGMAESYGAAAPMASMVLADKQKRRTLLKVSVFITATIVAVACGVLLAMEHRGNTDNQGALSGAYYAVTKPPAFNFNRFIRNAWFYTGRSSDGQEEGFIEKLARKHHYKLQIHHLQSFKDNEFRAALFSENIHCIVFPPLIHFPGVSELAKKDLRGYVSAGNNVVFIGSYEWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSLSRLEQPDGSIYSVKVDSIPMDGKCMFDTMGACVVFYVKYNLGTVCYIAFDYDTPYGIGHWDQILHAAMMM
Ga0186123_114009Ga0186123_1140091F087277MLSPFERRARVSFLAVAAAAAAFALAIVVLESSSPAPYYGKPVTAPERWLEDGRASINMFRVARSDMQKKVLRGTQLPHQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFNPQYDLQVRLDAIHTALSQLAAQTGVYLTNPPVVQVDESVFDEAASDVSRFRKLVERIPEMHNAKYYWVVQYNIIRTELRKTSSMLTTVVNIAKHHFLEVADSIDSMRMNVEATHEG
Ga0186123_117001Ga0186123_1170011F082776ALRVSSNVLLAMAIVSYGSLPHAAESPKKRSSSFLIGIAAASALLLVGVIALVARQDFEDPDGSVTLMNLNAQEAREMKARRQSLVVRGGQEDVAGNPEGGILENVPPTVVAPVPGPPDFNGASAIVARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNMRCTLRGYRNLAGDFTGNTIYTGFKKIYTGKSQVQTGHVPRGIVGEFDIMTCRDLNNGEVQYFRIRY
Ga0186123_117792Ga0186123_1177921F011850HIAESAQSLLAAVPNVPFVDEVTGEAQGFTAPKNHFASVIGLWALFALPVWSAAYKQAGCDTPSWFGVSQVSEDAPGIGLVAKAAPVYDGPSFREGLEYVLSFLWKPPILIAWRPRADLDRENMDPARDTVVSSLYKSLGGALDKTAIYDEEDQLLILSDIEEFPSTPLGERRFAIAEAAGWMTGNPSFGKSLIEFSEETRKGKKQAGTVTISAEELQRLRAEAAKMK
Ga0186123_119101Ga0186123_1191011F019282MFALLAMTMLDDVNTINTWAEPHNANGVTPNTVIDSNDEPPGNNQQRMAVRGY
Ga0186123_120300Ga0186123_1203001F021541LQMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186123_121386Ga0186123_1213861F021541MCAWQMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186123_121651Ga0186123_1216512F021541MFLFQMFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186123_121896Ga0186123_1218961F096687MLEILYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186123_122037Ga0186123_1220371F019841MAVAFDTGYAGSSGIQPQSWVNGNGTSYIYFGSGQFDGQGSGHDYMGTLYMPPTGYVNNCDGGRSHTYCDYRQE
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