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Sample 3300017122
3300017122: Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 464 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1363)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017122 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211818 | Ga0186106 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 464 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1363) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 33217589 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | |
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F088199 | Metatranscriptome | 109 | N |
| F096482 | Metagenome / Metatranscriptome | 104 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186106_120438 | Ga0186106_1204381 | F088199 | HMRCLVLFELVVGAVSALVVAPPAAVSSSARVAAGPVMACNGGKGGNGGKNPPKDKTVYRPKLSKLIQRADSAENVKSVLLTAQTEAMLLKMNWKYRRAAAHQVRKRAAQASAS |
| Ga0186106_120589 | Ga0186106_1205891 | F096482 | LNMLIVVFLSAQSFQPLLRPASPLPAARLSPPSCMARWTQQDMRAKRARLPPEVDGLLSADTPRESTEALWAALRACYANEASAVAAATRNTGTILPYLNSPSNIYGCYDVLVGMLGTEGARDVCSKNPGILQCNPRTLALEEPSSIVAAAEQVDFFERGVLGRLPPALRQNLDKVAFMLLAVPIAKRLADCAGQTCGL |
| Ga0186106_121867 | Ga0186106_1218671 | F088199 | LVLAEIHMRCLVLFALVVGAVSALVVAPPAAVSSSARVAAGPVMACNGGKGGNGGKNPPKDKTVYRPKLSKLIQRADSAENVKSVLLTAQTEAMLLKMNWKYRRAAAHQVRKRAAQFGVEVPGNFAAFNVRPRNAKKHLLVPSM |
