NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017045

3300017045: Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 281 ?mol photons light - Hemiselmis andersenii CCMP 441 (MMETSP1043)



Overview

Basic Information
IMG/M Taxon OID3300017045 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211827 | Ga0186115
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 281 ?mol photons light - Hemiselmis andersenii CCMP 441 (MMETSP1043)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size25648402
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae12
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27122
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005668Metagenome / Metatranscriptome393Y
F010032Metagenome / Metatranscriptome309N
F019841Metagenome / Metatranscriptome227Y
F020015Metagenome / Metatranscriptome226N
F025760Metagenome / Metatranscriptome200Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F082776Metatranscriptome113N
F084315Metagenome / Metatranscriptome112N
F087277Metagenome / Metatranscriptome110N
F096687Metagenome / Metatranscriptome104N
F101267Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186115_105694All Organisms → cellular organisms → Eukaryota → Cryptophyceae1196Open in IMG/M
Ga0186115_107666All Organisms → cellular organisms → Eukaryota → Cryptophyceae1003Open in IMG/M
Ga0186115_108275All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712957Open in IMG/M
Ga0186115_109152All Organisms → cellular organisms → Eukaryota → Cryptophyceae892Open in IMG/M
Ga0186115_109485All Organisms → cellular organisms → Eukaryota → Cryptophyceae869Open in IMG/M
Ga0186115_109545All Organisms → cellular organisms → Eukaryota → Cryptophyceae865Open in IMG/M
Ga0186115_109696All Organisms → cellular organisms → Eukaryota → Cryptophyceae854Open in IMG/M
Ga0186115_109751All Organisms → cellular organisms → Eukaryota → Cryptophyceae850Open in IMG/M
Ga0186115_110001Not Available834Open in IMG/M
Ga0186115_110843All Organisms → cellular organisms → Eukaryota → Cryptophyceae780Open in IMG/M
Ga0186115_111279All Organisms → cellular organisms → Eukaryota → Cryptophyceae755Open in IMG/M
Ga0186115_111389All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712749Open in IMG/M
Ga0186115_114532All Organisms → cellular organisms → Eukaryota → Cryptophyceae595Open in IMG/M
Ga0186115_115174All Organisms → cellular organisms → Eukaryota → Cryptophyceae567Open in IMG/M
Ga0186115_115438All Organisms → cellular organisms → Eukaryota → Cryptophyceae556Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186115_105694Ga0186115_1056941F084315KSQSGMAYESLDGTPSRSRRSLLLAALAAAGVVCVVAAVAISGNAQADSAKQSELLTQDLVLFKMEPPPEPWSPPENLWLYWGDAPNKRFGHSGDNVRHLIKLGRIAGGEFRDPHFLMDFGSQTFRDLSEACCSALIMAPMKNSFPIYNAQSNVAQRMRNFVANGNHMILTGGSLVSIEFINRYFYYNIQPESTQGTFKGSGYGNWSPGPFRKLINDDLPSVYKLTPDTLYQDYTTVSSMALRSLPSGTTVLYMTPHSSPVFAIKFCQRLSEKHGEPPIKTVPRDCARHAKRGFPCSCGTITYIGYDWHYDQTAEAWDKVMLAAVEYQSDSDVSATMTPNCPIPKKVVEDPHAPKPPPAC
Ga0186115_107666Ga0186115_1076661F020015MVSPSPYSAVVSPDIGDKRRTQMMQAAVCTALALAAVVCVGLVVHERGSGAVGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVQHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMNRLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186115_108275Ga0186115_1082751F019841MFQFLRSVDFDTGYAGSGGVGPQSWVNGNGNSYIYFGSGQFDGQGSGHDFYGTLFMPPTGFVNNCDGGRSHTYCDYRQE
Ga0186115_109152Ga0186115_1091521F010032MRALHTASAALALCLVALAGWHLQNRDSHFELFSKSAAAAAPQQTTELSWLQTSAFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM
Ga0186115_109485Ga0186115_1094851F087277QHIFIMAAPEGESIHRRRARMAMAGVCATAMALVAVICLLESGKQEAREPISGGEQWLEDGRASVNMFRVARSPMMKAALRGAPLPRQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYNIQVHLDAVHTALQQLAAQTGVYLTNPPVVNVDESVFDDAASDVSRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKASSELTEVVNIAKHHFLEVADSIDSMRMNVEAIHE
Ga0186115_109545Ga0186115_1095451F025760MYDTRMGGNWYKADEPWGAFLQGEGNPAVTIHPYESDPSSGSFNPQAHTTWVPTDWSSWPNYNVHGYGIY
Ga0186115_109696Ga0186115_1096961F032673LTLRGFMVSIADYGSVGASAPKTPRTNMKLLASVLALAAVALVTITTLATQDDGMATLAAFNKQEMQNMLTKAKTMSTSQLQQEVNELEAEKQDGESMRTSQLVTVNENTAANPEGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYNGKSQIQTGHIPRGIVGEFDIMTCRDVGNGEVQYFRIRYA
Ga0186115_109751Ga0186115_1097511F010032RTLNTVSCAAALMCLALAVVHVRSSRPSTLFQESAVVPQQTTELSWLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM
Ga0186115_110001Ga0186115_1100011F005668LRSQLFALLFDLEDYATTYRATRDAYLKAANELKLATGPYKAARDAYVAATATYTKSLYE
Ga0186115_110843Ga0186115_1108431F082776VATYGSMPEGAPARQPRSGRRAALISIAALAMVGCIALTTLSARAEDPTGMDTLAAWKAQESARPTMLVSENDAANPSGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLSGDFTGNTIYTGFKKIYNGKSQVQTGHVPRGIVGEFDIMTCRDLGNGEVQYFRIRYS
Ga0186115_111279Ga0186115_1112791F020015GQVAMGGAYYAVTKPPAFNFNRFIENAWIYDGRSADSGTEGFIEHMAKRHHYKLNIHRLQSLRDNEVRAALFSKSIHCIIFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFRLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDASVYAAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFDYDTPYGIEHWDQILHAAMMM
Ga0186115_111389Ga0186115_1113891F096687VDRLVLLWILQKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186115_114532Ga0186115_1145321F025760MLFAVVPISSLRNDPYSMYDTKASGNWYKCDDPYGCFLQGDGNPAVTVAPYESDPSSGSFNPQAHTTWVPTDWSSWPNYNVHGYGVY
Ga0186115_115174Ga0186115_1151741F101267HVIAMGCCSSRPPGSHEWQSQVPGSYKQNPVPIVNKKKELPPDFFIKCFMKGWLRTLPKKQRIWCMIHENNFYFMDSEEDTEPRKFFCYDGCLVNLKGKELEIQTAELMGGSVPRATYKFMAEDEEKALEWYEASLKASSRRN
Ga0186115_115438Ga0186115_1154381F026478QIKMVGKTLLISLSLFLTLSLLVDAAKPKRKTVSIDDEETVKARDFALAEIIKLSDSYRDLKFNKVISAETARSAFADGTNYFLKVEIECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDYDEGEGKKTEL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.