NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300016961

3300016961: Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 35 psu salinity and 721 ?mol photons light - Hemiselmis tepida CCMP 443 (MMETSP1355)



Overview

Basic Information
IMG/M Taxon OID3300016961 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211821 | Ga0186109
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 35 psu salinity and 721 ?mol photons light - Hemiselmis tepida CCMP 443 (MMETSP1355)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size21269891
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae11
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27125
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003766Metagenome / Metatranscriptome469Y
F005668Metagenome / Metatranscriptome393Y
F010032Metagenome / Metatranscriptome309N
F019282Metagenome / Metatranscriptome230Y
F019841Metagenome / Metatranscriptome227Y
F020015Metagenome / Metatranscriptome226N
F025760Metagenome / Metatranscriptome200Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F036560Metagenome / Metatranscriptome169N
F087277Metagenome / Metatranscriptome110N
F096687Metagenome / Metatranscriptome104N
F101267Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186109_101835All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii1800Open in IMG/M
Ga0186109_104512All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis1178Open in IMG/M
Ga0186109_105658All Organisms → cellular organisms → Eukaryota → Cryptophyceae1027Open in IMG/M
Ga0186109_105730All Organisms → cellular organisms → Eukaryota → Cryptophyceae1018Open in IMG/M
Ga0186109_106378All Organisms → cellular organisms → Eukaryota → Cryptophyceae951Open in IMG/M
Ga0186109_106753All Organisms → cellular organisms → Eukaryota → Cryptophyceae914Open in IMG/M
Ga0186109_106851All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712905Open in IMG/M
Ga0186109_107389All Organisms → cellular organisms → Eukaryota → Cryptophyceae858Open in IMG/M
Ga0186109_107557All Organisms → cellular organisms → Eukaryota → Cryptophyceae845Open in IMG/M
Ga0186109_108057All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712804Open in IMG/M
Ga0186109_108134All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii798Open in IMG/M
Ga0186109_109366All Organisms → cellular organisms → Eukaryota → Cryptophyceae713Open in IMG/M
Ga0186109_110295All Organisms → cellular organisms → Eukaryota → Cryptophyceae656Open in IMG/M
Ga0186109_110498All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712645Open in IMG/M
Ga0186109_111120All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712612Open in IMG/M
Ga0186109_112101All Organisms → cellular organisms → Eukaryota → Cryptophyceae562Open in IMG/M
Ga0186109_112690All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales535Open in IMG/M
Ga0186109_112835All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712528Open in IMG/M
Ga0186109_113344All Organisms → cellular organisms → Eukaryota → Cryptophyceae507Open in IMG/M
Ga0186109_113345All Organisms → cellular organisms → Eukaryota → Cryptophyceae507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186109_101835Ga0186109_1018352F036560MNQVFQTVFQTEELYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186109_104512Ga0186109_1045121F003766MPTWNAQTLAVSALTAYYMFYGVRAALGDESAVPDVRDGVKSTKLLYVQTLGYHMLMDVCLMIGVVVNDIAHVMMPAFVAAMLAVVFSQFIIDDLRGAAPAAAFALVFAFLVPGAPARKPIKWNLATGFFTFNSCVALLVGIAMVSGDDSAIPKQMKPLSLNQIKFIGTTEFTLAAYMFGSILVGHAHAMQLFCVLFLCVACALHWVIGDIAENPVVLVFAMAHLCLWFVFRGKDEAKKQ
Ga0186109_105658Ga0186109_1056581F025760MYDTRMGGNWYKADEPWGAYLQGEGNPAVTIHPYESDPSSGSFNPQAHTTWVPVDWSSWPNYNVHGYGVY
Ga0186109_105730Ga0186109_1057301F032673MKLLASVLALAAVALVAITTLATQDDGMATLAAFNKQEMQNMLVKAKTMSTSQLQQEVNELEAEKQDGESMRTSQLVTVNQNTAANPEGGVLENVPATIVAPVPGPPDFNGASAVVARLPNIGFAPSMLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYNGKSQIQTGHIPRGIVGEFDIMTCRDVGNGEVQYFRIRYA
Ga0186109_106378Ga0186109_1063781F020015MQFVVCTAVAFAAVVCLGLVVHEGRSGAGGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVEHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMARLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186109_106753Ga0186109_1067531F087277NRMASPDGESIHRRRARMAMAGVCATAMALVVVICLLEGGKQGAREPISGGERWLEDGRASVNMFRVARSPMMKAALRGAPLPRQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYNIQVHLDAVHTALQQLAAQTGVYLTNPPVVNVDESVFDDAASDVSRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKTSSELTEVVNIAKHHFLEVADSIDSMRMNVEAIHE
Ga0186109_106851Ga0186109_1068511F019282MFSLLTLTMLGCKDDVNTINTWAEPHNANGITPNTVIDSNDEPPKNNQQRMSAR
Ga0186109_107389Ga0186109_1073891F010032AMERSSPSMRAIHTASAALALCLVALAGWHLQNRDTHFELFSKSAAAVAPQQTTELSWLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATIAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM
Ga0186109_107557Ga0186109_1075571F010032AMAMISSRALNTVSCAAALMCLALAVVHVRSSRPSTLFQESAVVPQQTTELSWLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATIAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM
Ga0186109_108057Ga0186109_1080571F005668MIAKLFDLEDYAGTYRETRNAYLKAANQLKLATGPYKAARDAYVAGTATYTKSLYE
Ga0186109_108134Ga0186109_1081341F019282MFSLLTLTMLGCKDDVNTINTWAEPHNANGITPNTVIDSNDEPPKNNQQRMSARCY
Ga0186109_109366Ga0186109_1093661F020015GGVGGQDVAMGGAYYAVSKPPAFNFNRFIENAWIYDGRNADADTEGFVEHMAKRHHYKLNIHRLNSLRDNEVRAALFSKSIHCIMFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFRLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDGSVYAAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFAYDTPYGVEHWDQILHAAMMM
Ga0186109_110295Ga0186109_1102952F101267MCGALAFVCRPLSAAVHAPAQPIVNKKKDLPPDFFIKCFMKGWLRTLPKKQRIWCMIHENNFYFMDNEEDTEPRKFFCYDGCLVNLKGKELEIQTAELMGGSVPRATYKFMAEDEEKALEWYEASLKASSRRN
Ga0186109_110498Ga0186109_1104981F019841MFQFLRSVDFDTGYAGSGGVGPQSWVNGNGNSYIYFGSGQFDGQGSGHDFYGTLFMPPTGSVNNCDGGRAHTYCDYRQE
Ga0186109_111120Ga0186109_1111201F096687ASLFFPLADSRGFCAMIEGLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186109_112101Ga0186109_1121011F026478ARSLAVALTLLLCLSLLADAAKPKRKTVPIDDEETVKARDFALAEIIKLSDSYRDLKFNKVISAETARSAFADGTNYFLKVEIECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDYEEDEAKGKAEL
Ga0186109_112690Ga0186109_1126901F036560VLLQVFETLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186109_112835Ga0186109_1128351F096687VLLWKIQKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186109_113344Ga0186109_1133441F025760PHPLPSSSVKMMFAVVPLSALRNDPYSMYDTKASGNWYKCDDPYGCFLQGDGNPAVTVAPYQSDPSSGSFNPQAHTTWVPVDWSSWPNYNVHGYGVY
Ga0186109_113345Ga0186109_1133451F101267EILLRRVIMGCCSSRPPGSHEWQSQVPGSYKQNPVPIVNKKKDLPPDFFIKCFMKGWLRTLPKKQRIWCMIHENNFYFMDNEEDTEPRKFFCYDGCLVNLKGKELEIQTAELMGGSVPRATYKFMAEDEEKALEWYEASLKASSRRN
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