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Sample 3300016922
3300016922: Metatranscriptome of freshwater eukaryotic communities from unknown location in Metatranscriptome of freshwater, at 19 C, 0 psu salinity and 381 ?mol photons light - Blepharisma japonicum Stock R1072 (MMETSP1395)
Overview
Basic Information
IMG/M Taxon OID 3300016922 Open in IMG/M GOLD Reference Gs0128947 | Gp0212353 | Ga0186641 Sample Name Metatranscriptome of freshwater eukaryotic communities from unknown location in Metatranscriptome of freshwater, at 19 C, 0 psu salinity and 381 ?mol photons light - Blepharisma japonicum Stock R1072 (MMETSP1395) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 18771269 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota 1 All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
Location Information
Location Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F000243 Metagenome / Metatranscriptome 1476 Y F010383 Metagenome / Metatranscriptome 304 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186641_102849 All Organisms → cellular organisms → Eukaryota 1411 Open in IMG/M Ga0186641_110659 All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 671 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186641_102849 Ga0186641_1028491 F010383 ADKKLSLPTRKNLRDNEDKKKEHLARIEAATGKSGVEFTIKDDIKVAEQLATNGYADRIGEVFYDAYLSQLADAIEKNTKDSAAKDALNGTWTTNKINFELDAKAEGYQQIKFPNGELTMSCQPGYIWTNISYLGNDIESRLTSDFAGATLSLKSAANLREYAPKRDELCAAIAATTGKSSVEFTFTDIKLMDAEVAKKGYENRLGEVFFQSYLQQLSESLTRLCASEAAKAALNQKWTSNKVYFELDAKAPSYQNVDFVNGDLRMSAKADYIWSNLGELGNDIPDKLTSEVLGVTLSLKSAQNIREYEEKAQVHLAAIGNSIGRGGPVTFVVEDVKGVDEALNKRDYNNRIGEVIWEAYLTQISEKLASLCKDDMVKEAIGDSFKNNLVFKIDPKAEGYQNCKFVGGNLVMSCKPDYIWTNISTLGEDIEKQL Ga0186641_110659 Ga0186641_1106591 F000243 FEMKLSLFIAAAAAAPLMTTLIPEAARPVMTTLMPEFAHPRVMTTLMPEFAHPLTMTTLLPEVAAPNGGVYFDRSVDTAAHITGAVTFSTGCAGSDQWGSNKCTWNWKEGITATVAGALQEDITTGKVVVDLKLNNVIPFSFSCPICGANCTFEIPVIKTPVTFPMPPCPIKAVTIPSKSKAFTLPGSNPLGVAASVTGTVQIADQTGSVIFKLSLNAKLS
