NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300016868

3300016868: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Aquil medium, 14 C, 21 psu salinity and 652 ?mol photons light - Pseudo-nitzschia heimii UNC1101 (MMETSP1423)



Overview

Basic Information
IMG/M Taxon OID3300016868 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212045 | Ga0186333
Sample NameMetatranscriptome of marine eukaryotic communities from Pacific Ocean in Aquil medium, 14 C, 21 psu salinity and 652 ?mol photons light - Pseudo-nitzschia heimii UNC1101 (MMETSP1423)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size27010419
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11022
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015298Metagenome / Metatranscriptome255Y
F023270Metagenome / Metatranscriptome210Y
F045520Metagenome / Metatranscriptome152Y
F056297Metagenome / Metatranscriptome137Y
F075635Metatranscriptome118Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186333_104419All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11022000Open in IMG/M
Ga0186333_110277All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta996Open in IMG/M
Ga0186333_110405All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta980Open in IMG/M
Ga0186333_110550All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia959Open in IMG/M
Ga0186333_111232All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae861Open in IMG/M
Ga0186333_111451All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102831Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186333_104419Ga0186333_1044191F045520MALNRLYKHVENLIGNNEDVADSIPCKANILSVRECRTGGKACDDLALDLLRCMAEFKVDATEKIRSSIGVAKYNEYVKELEEKHGPTKAAEIINESSEQLKDIKAYQVLHRVANDTHPKGPPRTKDDLMKWTHADQVRMEMGEGEWWDAVKIVGYEFGLAKVDALFGLQKENDLIESAQRRLIPGFAQAKENAVSAAKKVEDSVKEAAPGGKTTADFAAAFNDLYPTKNDLESALK
Ga0186333_110277Ga0186333_1102771F015298MIRYLVERKDWLLLVCFWVDAINTTISFPLIMWNGPRWVLCSTDPDAKEKPDDPKTVVDLTDTDRKSFEVLWEIFGICYEGYFGFTISTLICLMTVPETRPIFAYSLFALYLYKAKAFFTTFKTDNAQGKTKLLSILFFYWPCYGGYCLLHLIEKFYLSSPSS
Ga0186333_110405Ga0186333_1104051F015298RNPFSSIQPDSTRHNSNQTQTQTQTQRITRRDETRKERQHTMIRYLVERKDWLLLVCFWVDAINTTISFPLIMWNGPRWVLCSTDPDAKEKPDDPKTVVDLTDTDRKSFEVLWEIFGICYEGYFGFTISTLICLMTVPETRPIFAYSLFALYLYKAKAFFTTFKTDNAQGKTKLLSILFFYWPCYGGYCLLHLIEKFYLSSPSS
Ga0186333_110550Ga0186333_1105501F023270MINGSCRCTIMSAFLLVLVALTTNMIQISGVDARNAHFTMEFIPTFKNGLPHKCKQEEIKVMEKFLGDILTKETGMVQHSVEYLDRMYDPNEGSQVSGVAAHMKRHHFSKLRGFDFTFDCPVQDNHYSCPDNDWCHVLCLDETVKPGHESLTKQANQLKERLHMHAKTLEGPYNIKCLGQTENLDFHLLVSVSP
Ga0186333_111232Ga0186333_1112321F056297MGFLSKIFPISVPLPRPSVQEGKTRICIAGFGFSHHTGRARAITTAIVEAYPDEYETWFYFDSRGYRPEFLDAIKKEIKESGASIPEDHKSSPFCWLEIGGSKKEMIAIGGRDKLCEWTQAKFDASDDKNAKILPLCEEEPPHSRKEIFFDNMPTGTIQTTTSD
Ga0186333_111451Ga0186333_1114511F075635MDPVKPSAEIASGEANYVSHDQEPKRGHVFCGVCCDVRTACIVVNIISLAFAGLGLIGLAPQMDRVGFERFGIVIAIFVLGVISSAFGLFGALKFKKVFTLVATVWFGIEALLALIIFRDYFACMTSIFFFYPHIMFYKEMSDGIMSRDTFPREKNCCGSCC
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