NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300016852

3300016852: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in enriched f/2 medium with seawater, 16 C, 35 psu salinity and 90 ?mol photons light - Pseudo-nitzschia fraudulenta WWA7 (MMETSP0850)



Overview

Basic Information
IMG/M Taxon OID3300016852 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212033 | Ga0186321
Sample NameMetatranscriptome of marine eukaryotic communities from Pacific Ocean in enriched f/2 medium with seawater, 16 C, 35 psu salinity and 90 ?mol photons light - Pseudo-nitzschia fraudulenta WWA7 (MMETSP0850)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22764003
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11022
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia multistriata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → cove → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)34.0847Long. (o)-119.05Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015298Metagenome / Metatranscriptome255Y
F045520Metagenome / Metatranscriptome152Y
F056296Metagenome / Metatranscriptome137Y
F079510Metagenome / Metatranscriptome115Y
F080841Metagenome / Metatranscriptome114Y
F098601Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186321_100242All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae4286Open in IMG/M
Ga0186321_103605All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11022003Open in IMG/M
Ga0186321_104031All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1892Open in IMG/M
Ga0186321_106512All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia multistriata1392Open in IMG/M
Ga0186321_109754All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102912Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186321_100242Ga0186321_1002421F015298MLNSLVPHKDKLLLFCISVDAVNTIITFPMIMWNGPKWLLQSTDPNAKEKIEDSDEGKEVVDLSDTDRRSFKVLWEIFGVCYEGYFGFTISTLICLFQSPETRPIFAYSLFALYVYKAKSFLTTFKTDNTQGKAKLLTILCFYFPCYGGYCLLHLAENYLL
Ga0186321_103605Ga0186321_1036051F045520MAFNKLYKHIENLIQNDEEVADSTPCKADILSVRECRKGAKACDDLGLDLLKCMAQCKVETTENVRSSIGVAKYNEYVKEMEDKHGKEGAAKIINEPSEQLKDVEAYQVLHRIANNTHPKGPPKTKDEVMNWTYADQVRLEMGEGEWWDAVKIVGYEFGLAKTDALFGLKKENDLIDSAQNRLIPGFADKKETALAAAKKIDDSVKDAAPGGKTAADFAAAFNDLYPTKDDLEAALK
Ga0186321_104031Ga0186321_1040311F079510MKLTTTFSKTVLAFTLLGHGVVGQEEIVAVCPISAAVPINVDDFNQPDWAAIVEIAFPPWAVPASGCPRLDKISGVLAEGYETFPTPEEGKFNPCYFTKAFAGLDPMLGGYPTPIDTKYPYEFAAPFFKQPGDGSTHHCPMDADPGTPIQSCPKVAPKCSEGQKDCNTITDEFGIGHVPPFVPLAALKNAVLGCGEDVCAWFDDEIAPCNIPKSVLDRLVSDTFGVGGEIRFTPPKILPDLPASDPKSTYYKLEYLGDPVACADDNCRGPHYCSKEAAVEDIWGDFCPYIHTGENSGLYRHPHVALAAFELWVANKCKPTVCPSTWLDSPNGKNYVTDKMKSTSITWAEMIDNNDPMAQPVVPYTWPNAGDGIYPGHELYGDLMIKPAGGSYVTKFVGAGSKVSAEDQPSDDENTNVDSASGASRASMALVGGISLLVATFSAFA
Ga0186321_106512Ga0186321_1065121F080841MCILAAICFFIGNALTIAYWRKEKERAHFDYDLYTDLDPGYIQMEWGFRVTGRPLYLSAGILNTVAWFFLMFPIVQLSWILSQKGTKWISLHVAITILVLTGSLTEWISHVLYIGSSMTSELLVRQFNLDSWITPNSEDAIGWRTLEITHIVTYGFISMIGAIEWIFLAMVLFLIHISVWRWRRNVDSTTFGSVWNALGLFIGLMCVLEFVAEVLRLDGYKTFGLIAFWYSGVNRLVLIPTWLILLGCRLPYASLKLNQQAHRREQEEPLTENAE
Ga0186321_107061Ga0186321_1070612F056296MKSIVAVLISLLAVSNAVELTLENFEEKTAGKTVFIKFLAPW
Ga0186321_109754Ga0186321_1097541F098601MGKNQKKQTIPEATLSKKDLKKVTKLESQIPYHEGRGNKDEVVKIKDQIEKIWTKTREAHELSFQ
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