NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300016814

3300016814: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with artificial seawater, 25 C, 31 psu salinity and 699 ?mol photons light - Symbiodinium kawagutii CCMP 2468 (MMETSP0134_2)



Overview

Basic Information
IMG/M Taxon OID3300016814 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211992 | Ga0186280
Sample NameMetatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with artificial seawater, 25 C, 31 psu salinity and 699 ?mol photons light - Symbiodinium kawagutii CCMP 2468 (MMETSP0134_2)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size3409551
Sequencing Scaffolds3
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)21.25Long. (o)-158.0Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000085Metagenome / Metatranscriptome2467Y
F000241Metagenome / Metatranscriptome1481Y
F009535Metagenome / Metatranscriptome316Y
F017489Metagenome / Metatranscriptome240Y
F018723Metagenome / Metatranscriptome233Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186280_100990All Organisms → cellular organisms → Eukaryota → Sar780Open in IMG/M
Ga0186280_101346All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae689Open in IMG/M
Ga0186280_102101All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae549Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186280_100732Ga0186280_1007321F000241MARPVLLPVLGVVAAVYTASLAFVGAPQGAPRVSKVPARVSAEYLERLGPKDSDVPFDPAAATGPGAAVEFKKRPFGILRYQPGQGGKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVTSINGANVQTEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAEPAAAPLAVQFNSIPGYVYKGAELKEDGQDGFAR
Ga0186280_100990Ga0186280_1009901F009535MLSTRSAFSREKMARGSLLPLLAAVGLVCLATRVLDTVFVGAPTSRGRSSVVPRSVGVDYLLRNGPKDADPPLINTATAAGPAHEVTFKKRPFGIARYAPGSTGTGAVVMEVTPKSRYPGDPQGQAFVAGVQPGWVVKSVNGQDVTGVPFESIMESLDDEVLDPVAALSLNLKESGTVTNFDSSTQADKSYGAVGESTFQFGGGQKAELPITVTYVEQR
Ga0186280_101346Ga0186280_1013461F018723TSLTGCSLPLGPVMPDKKEASSKKGKEPFTSQYEVKDVFPHFCDRKTKLLALQDVPYVLRAMGLTIYVDEEKGIREQLEKVDGMGKPVSLQTMQSWVEEHGKNYVKSYDDAFSAVGTLLHEGIIGDPSGRVQIPFLRHLVSEVGDKIKLDTFDKIIKGGDSAVAVGIKGDSCSLDEFLTFLQK
Ga0186280_101783Ga0186280_1017832F000085SLASLVWTAGLVSAQDWPTCQEENIVIRNAGRALFTNLQGFGATVGCFQDDCQNTDKFVASSIESCTKVCQSLPECEFWVWGQEEGEQKCWFRLGDDGREAGEGWISGGRGCHPPEQQAIVMGNFDCWIDGFNYDTCCDPKFGPSGNSQCWDGVFNYDRCCFPKEEL
Ga0186280_102101Ga0186280_1021011F017489WLLGTYPLGRPLSEGWRFMFTVSFFARIGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQNK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.