Sample 3300016812

Overview

Basic Information
IMG/M Taxon OID	3300016812 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211981 \| Ga0186269
Sample Name	Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 25 C, 31 psu salinity and 673 ?mol photons light - Symbiodinium kawagutii CCMP 2468 (MMETSP0133_2)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	3083594
Sequencing Scaffolds	3
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Pacific Ocean
Coordinates	Lat. (^o)	21.25	Long. (^o)	-158.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000241	Metagenome / Metatranscriptome	1481	Y
F001297	Metagenome / Metatranscriptome	728	Y
F004725	Metagenome / Metatranscriptome	426	Y
F018723	Metagenome / Metatranscriptome	233	Y

Family

Category

Number of Sequences

3D Structure?

F000241

Metagenome / Metatranscriptome

1481

F001297

Metagenome / Metatranscriptome

728

F004725

Metagenome / Metatranscriptome

426

F018723

Metagenome / Metatranscriptome

233

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186269_100877	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	743	Open in IMG/M
Ga0186269_101034	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	700	Open in IMG/M
Ga0186269_101373	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	615	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186269_100877

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

743

Open in IMG/M

Ga0186269_101034

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

700

Open in IMG/M

Ga0186269_101373

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus

615

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186269_100290	Ga0186269_1002901	F000241	MGLERRHLQGXXXXVTTQPLFAFFFSLVFRVAMARPVLLPVLGVVAAVYTASLAFVGAPQGAPRVSKVPARVSAEYLERLGPKDSDVPFDPAAATGPGAAVEFKKRPFGILRYQPGQGGKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVTSINGANVQTEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAEPAAAPLAVQFNSIPGYVYKGAELKEDGQDGFGSKXXXXCALPAEPLSRLSHL
Ga0186269_100877	Ga0186269_1008771	F018723	MPDKKEASSKKGKEPFTSQYEVKDVFPHFCDRKTKLLALQDVPYVLRAMGLTIYVDEEKGIREQLEKVDGMGKPVSLQTMQSWVEEHGKNYVKSYDDAFSAVGTLLHEGIIGDPSGRVQIPFLRHLVSEVGDKIKLDTFDKIIKGGDSAVAVGIKGDSCSLDEFLTFLQK
Ga0186269_101034	Ga0186269_1010341	F004725	MATSAPLLGEKKKGGHSKASIFYGADEYLEELKRKYAHDHEIAALKNLLPGEADPNAAGVAASQDKMLKVEKNNENRSLKTNRLFPTANKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFVTQVLMVIGYCAALATFPEYWWTCTLLFGVPFSYIAIQ
Ga0186269_101373	Ga0186269_1013731	F001297	KRTWDISVNYALNSGKMNLAISGVTLLTFMMIHLYQFRFGATEPWTLCPPPYLLNLKTLLQLRLNLFWVDDPGCKTVAVRDIYRMEFEVFQSLGWCLFYVMAVIIFSTHMCLGWQKVVPAPALEIPKKYHSKATHMGYIFTIFIAMVYVSFPMYCHLVTMSSGSLSKEPATP

Scaffold ID

Protein ID

Family

Sequence

Ga0186269_100290

Ga0186269_1002901

F000241

MGLERRHLQGXXXXVTTQPLFAFFFSLVFRVAMARPVLLPVLGVVAAVYTASLAFVGAPQGAPRVSKVPARVSAEYLERLGPKDSDVPFDPAAATGPGAAVEFKKRPFGILRYQPGQGGKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVTSINGANVQTEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAEPAAAPLAVQFNSIPGYVYKGAELKEDGQDGFGSKXXXXCALPAEPLSRLSHL

Ga0186269_100877

Ga0186269_1008771

F018723

MPDKKEASSKKGKEPFTSQYEVKDVFPHFCDRKTKLLALQDVPYVLRAMGLTIYVDEEKGIREQLEKVDGMGKPVSLQTMQSWVEEHGKNYVKSYDDAFSAVGTLLHEGIIGDPSGRVQIPFLRHLVSEVGDKIKLDTFDKIIKGGDSAVAVGIKGDSCSLDEFLTFLQK

Ga0186269_101034

Ga0186269_1010341

F004725

MATSAPLLGEKKKGGHSKASIFYGADEYLEELKRKYAHDHEIAALKNLLPGEADPNAAGVAASQDKMLKVEKNNENRSLKTNRLFPTANKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFVTQVLMVIGYCAALATFPEYWWTCTLLFGVPFSYIAIQ

Ga0186269_101373

Ga0186269_1013731

F001297

KRTWDISVNYALNSGKMNLAISGVTLLTFMMIHLYQFRFGATEPWTLCPPPYLLNLKTLLQLRLNLFWVDDPGCKTVAVRDIYRMEFEVFQSLGWCLFYVMAVIIFSTHMCLGWQKVVPAPALEIPKKYHSKATHMGYIFTIFIAMVYVSFPMYCHLVTMSSGSLSKEPATP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300016812: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 25 C, 31 psu salinity and 673 ?mol photons light - Symbiodinium kawagutii CCMP 2468 (MMETSP0133_2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences