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Sample 3300016794
3300016794: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 600 ?mol photons light - Pseudo-nitzschia delicatissima UNC1205 (MMETSP1432)
Overview
Basic Information
IMG/M Taxon OID 3300016794 Open in IMG/M GOLD Reference Gs0128947 | Gp0212066 | Ga0186354 Sample Name Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 600 ?mol photons light - Pseudo-nitzschia delicatissima UNC1205 (MMETSP1432) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 18030849 Sequencing Scaffolds 3 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia delicatissima 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location North Pacific Ocean Coordinates Lat. (o ) 48.816 Long. (o ) -128.666 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F015298 Metagenome / Metatranscriptome 255 Y F023270 Metagenome / Metatranscriptome 210 Y F045520 Metagenome / Metatranscriptome 152 Y F056296 Metagenome / Metatranscriptome 137 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186354_100646 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia delicatissima 2854 Open in IMG/M Ga0186354_102648 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 1873 Open in IMG/M Ga0186354_109582 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia 811 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186354_100646 Ga0186354_1006461 F015298 KINLERVITDHTNNHTKQTTMSMINGVLGYMIAHKDWLLLGCFSVDAINTIISFPLIMWNGPKWVLKSTEPDAKEKIEDAQEAKKVVDLSDTERKSFEVLWKIFGICYEGYFGFTISTLICLFQVPETRPIFAYSLFALYLYKAKAFFDTFKTDNRQGKAKLMSILYFYWPCYGGYCLLHLIEKYLS Ga0186354_102648 Ga0186354_1026481 F045520 MAFNRLYKHIECLIQTDDDVADNIPCKADILSIRECRKGGKACDELGLDLLRCMAQFKVDETEKIRASIGVAKYNEYAKEMEDKLGKEKAAVITNEPSEQLKDVEAYQVLHRIANDKHPKGPPKTKADLMDWTYADQVRLEMGEGEWWDAVKIIGYEFGLAKTDALFGLKKENDLIDSAQRRLIPGFGDKKESAMSAAKKIEESVKEAAPGGKYASDFAAAFNDLYPTKDDLDAAL Ga0186354_106030 Ga0186354_1060302 F056296 MKSIISLFLSLMAVANAVELNADNYDELTAGKTVFIKFLAPW Ga0186354_109582 Ga0186354_1095821 F023270 MVYSRYRNSLLAALILVVMTMTTNTIHISSVEARNAHFTMEFIPTFKNGLPHKCGPEEIKVMETFLGDILAKETGMVEHSVEYLDKMYDPNEGSQATGVAAHMRKHHFSKVRGFDFTFDCPLQEGHYSCPDNDWCHVLCLDETVKPGHESLTKQASKLKERLHQHAKTLEGPYNVKCLGHTPDLDFHLLVSVSP
