| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300014147 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128781 | Gp0206847 | Ga0180440 |
| Sample Name | Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Washington, USA - P5_4mM MetaG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 90288736 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 5 |
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Seattle, Washington | |||||||
| Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025010 | Metagenome / Metatranscriptome | 203 | Y |
| F043264 | Metagenome / Metatranscriptome | 156 | Y |
| F076927 | Metagenome / Metatranscriptome | 117 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0180440_104293 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 4834 | Open in IMG/M |
| Ga0180440_107279 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1943 | Open in IMG/M |
| Ga0180440_107815 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1744 | Open in IMG/M |
| Ga0180440_108518 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 1512 | Open in IMG/M |
| Ga0180440_109763 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1227 | Open in IMG/M |
| Ga0180440_116174 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 612 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0180440_104293 | Ga0180440_1042931 | F043264 | VSNGAGLTSATSVSTSAGLTSALANTAVGRIVLAPGNYMLSGQLGVTRSIVLEAAVAGSAVLDAQASSSSQRRVLNINPGPSGVVQLIGLNITGGYIQDPG |
| Ga0180440_107279 | Ga0180440_1072792 | F076927 | LAWCTMLPCTETSNVPGLNRGLQLAVPSHRRELQTEVSTSADLTSALANTAVSRIVLASGTYNLIAELSITRSVILEAAAGATVTLNAQAINSTSSRRVLNINPGSSGVVQLIGLGITGGYIGGVRAHVQKLPWPQWESC* |
| Ga0180440_107815 | Ga0180440_1078151 | F043264 | VSTAAGLTSALANTAVGRIVLASGTYYLTAELSITRSVIIEAAAGATVTLNAQAGSSSPRRVLNINPGSSGVVQLIGLNITRGYVSDLFGRYQTG |
| Ga0180440_108518 | Ga0180440_1085181 | F043264 | VSTTADLTSALANTAVGRIVLASGTYLVSSVEFLITRSVILEAAVAGSVVLDAQGMGGKRVLRINLGSSEFV |
| Ga0180440_109763 | Ga0180440_1097632 | F025010 | ATIVSKFLDDVVYGAIRMKESWKVAHELLMLYFREIDLDPLRLMHMGNVFRRGGQDTLLSEARRNSAASFRVSGGILQLDGAFDTIKDTKVIKPSGEGDEHSKRPCSDYNAGRPCKKLKPDGTCVFAHKCNQFVSDKGANGYCFGDHVRPDCKYDDAKKLKAPAK* |
| Ga0180440_116174 | Ga0180440_1161741 | F025010 | KRTDFTFKLEAVGKSKATSHSATLVRPETEAEFYEMSHLFVMTIIALGLASATIVLKFMDDVVFATIRMKETFRVAHELFIIYLREMDFDPARALHMGNVFRRGGQDTLLSEARRNAAASFRTCGGTPQLDGAKKSDAKNPKTDTKPNGKSDDSSKKPCPDFNAGRPCKKLKPDGTCVFAHRCNQFVSDKGPGGYCFGVHARCT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |