| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300013354 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118444 | Gp0135625 | Ga0121406 |
| Sample Name | Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01600 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Weill Cornell Medical College |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 96924040 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Built Environment → City → Subway → Unclassified → City Subway Metal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA:New York City | |||||||
| Coordinates | Lat. (o) | 40.88 | Long. (o) | -73.87 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009686 | Metagenome / Metatranscriptome | 314 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0121406_1004230 | Not Available | 2156 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0121406_1004230 | Ga0121406_10042301 | F009686 | NSILKRNLCMTEREMFEASFKRPTNFFKLSERQQWDIDSDLGILDWQGSGLSKEDEERFRKHYS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |