NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013109

3300013109: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 198m, 250-2.7um, replicate b



Overview

Basic Information
IMG/M Taxon OID3300013109 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118094 | Gp0139514 | Ga0171649
Sample NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 198m, 250-2.7um, replicate b
Sequencing StatusPermanent Draft
Sequencing CenterGeorgia Genomics Facility
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size194803982
Sequencing Scaffolds36
Novel Protein Genes39
Associated Families39

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium3
Not Available14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → unclassified Acidiferrobacteraceae → Acidiferrobacteraceae bacterium1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED641
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED411
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)N/ADepth (m)198
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001293Metagenome / Metatranscriptome729Y
F003081Metagenome / Metatranscriptome508Y
F003612Metagenome477Y
F004906Metagenome / Metatranscriptome419Y
F005362Metagenome / Metatranscriptome403Y
F005524Metagenome398Y
F005620Metagenome395Y
F007697Metagenome346N
F008361Metagenome / Metatranscriptome334Y
F012401Metagenome / Metatranscriptome281Y
F014929Metagenome / Metatranscriptome259Y
F017555Metagenome / Metatranscriptome240Y
F025381Metagenome202Y
F025588Metagenome / Metatranscriptome201N
F026408Metagenome / Metatranscriptome198Y
F031648Metagenome182Y
F038406Metagenome / Metatranscriptome166Y
F038639Metagenome165Y
F040132Metagenome162Y
F041826Metagenome / Metatranscriptome159Y
F047104Metagenome / Metatranscriptome150Y
F048570Metagenome148Y
F052658Metagenome / Metatranscriptome142Y
F054784Metagenome139Y
F057671Metagenome / Metatranscriptome136Y
F058432Metagenome135N
F058454Metagenome135Y
F059336Metagenome134Y
F061374Metagenome132Y
F063762Metagenome / Metatranscriptome129Y
F074006Metagenome120Y
F084710Metagenome / Metatranscriptome112N
F089050Metagenome / Metatranscriptome109Y
F089913Metagenome / Metatranscriptome108N
F094101Metagenome106Y
F096037Metagenome / Metatranscriptome105N
F097148Metagenome / Metatranscriptome104Y
F101067Metagenome102Y
F101495Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0171649_101919All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium10726Open in IMG/M
Ga0171649_105627All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium4645Open in IMG/M
Ga0171649_110431Not Available2979Open in IMG/M
Ga0171649_110886All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → unclassified Acidiferrobacteraceae → Acidiferrobacteraceae bacterium2894Open in IMG/M
Ga0171649_114094All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon2446Open in IMG/M
Ga0171649_118336All Organisms → cellular organisms → Bacteria2051Open in IMG/M
Ga0171649_119652Not Available1966Open in IMG/M
Ga0171649_122582Not Available1801Open in IMG/M
Ga0171649_125325All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1672Open in IMG/M
Ga0171649_125346All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1671Open in IMG/M
Ga0171649_125427Not Available1669Open in IMG/M
Ga0171649_125684All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1657Open in IMG/M
Ga0171649_125703All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1656Open in IMG/M
Ga0171649_126604All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED641620Open in IMG/M
Ga0171649_134985All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1365Open in IMG/M
Ga0171649_137064All Organisms → Viruses → Predicted Viral1319Open in IMG/M
Ga0171649_139023All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1278Open in IMG/M
Ga0171649_139118Not Available1276Open in IMG/M
Ga0171649_140480All Organisms → Viruses → Predicted Viral1249Open in IMG/M
Ga0171649_141770All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata1225Open in IMG/M
Ga0171649_155359Not Available1022Open in IMG/M
Ga0171649_155677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales1018Open in IMG/M
Ga0171649_158242Not Available988Open in IMG/M
Ga0171649_161256All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium953Open in IMG/M
Ga0171649_161562Not Available950Open in IMG/M
Ga0171649_162538Not Available939Open in IMG/M
Ga0171649_165041All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon913Open in IMG/M
Ga0171649_170007Not Available861Open in IMG/M
Ga0171649_170954All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae852Open in IMG/M
Ga0171649_174038All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41821Open in IMG/M
Ga0171649_174900All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium813Open in IMG/M
Ga0171649_178391Not Available777Open in IMG/M
Ga0171649_180950Not Available748Open in IMG/M
Ga0171649_183313All Organisms → cellular organisms → Bacteria722Open in IMG/M
Ga0171649_191100Not Available632Open in IMG/M
Ga0171649_191118Not Available631Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0171649_101919Ga0171649_1019191F074006MSVLAGIPNTILALVGIGLTLFIAKDKLKLQEKIDDIRGRVNL*
Ga0171649_105627Ga0171649_1056271F061374MDWMNAPTKIAQEAGRNVGGIKAAKTINLQISYWALLEQIRSKKGFKNGN
Ga0171649_110431Ga0171649_1104317F089050MVELNHNVVSFNSDTLIKGNHGVLVAVFVTKKGSGSNKV
Ga0171649_110886Ga0171649_1108861F038406YLHYYIKFMKGAVMYKTVDDTSFVYGPQTNAKVGLYGAVIAIAFIVMLAVLYAPEISTIGEGVGLDYNLVS*
Ga0171649_114094Ga0171649_1140943F007697VSNQVNNVPDNVETIVVIAGSGLSALGVAVGCKLFNNNVKNIYAVALSDYINKNKKMWYDKFLPEEQFDGKLNIVPSEYPYQHKLKLDYTLPLDQTYEAKAWDWMIKNIEPSEKVLFWDVGIKEYDLSYIEPIKWHKSEYEKILDREMRRKTETVKHGFF*
Ga0171649_118336Ga0171649_1183361F097148KDRARAKKKNHKLPKRHIQMIRSQRGKMSVREISKWFARQTHYIYKCSPTMVHYILTEKYHKPKEKQLSIYDLINNSELDEKNLDEIDPRDVNYE*
Ga0171649_119652Ga0171649_1196521F004906MATKTEKKTDARDALDSNEGNELTAIAVKSLTNLEEKVEAIDWKLWEIYNIIKNYVESEPQNAPQVSQPQASASDIASEIAKSLGEKPTE
Ga0171649_122582Ga0171649_1225823F096037MKTTVYAWGAEKNNVLHIYAGQTTQKNITTRLNGVKDIVTGPFNSWFVGPEGSTLGAYNLDLIYADTTQNYSRHKEQKAINAVWAVENKYRGAKLPVRAMNTNRAVRLNTKSGGNYTDLRFTSVYGHVLSHINELEASFDEEVFQAIESWIKNKIDDSTTLKRKFEKVIKAKAKKEALIKNIAKALDMSSVLA*
Ga0171649_125325Ga0171649_1253256F057671MSVTKELDRIAFDVFEQTKTTMYETIAKELEYSDLKDINDNELHEYVMNQVINRFIQK*
Ga0171649_125346Ga0171649_1253464F041826KTRNSPTALQRMEMVIPDISACGIDSYDTASKVILDQW*
Ga0171649_125427Ga0171649_1254271F059336VVEEKPVVEKPVVDNVQYLIFDSSIISYVILDNRQVIEGIQNFSEKEIKFLTFDAVINDLIESERLAYNRILTFDQVVNKLKKIGDFQYYQFDENSEIGQRADALFKAEKYIDDSDILEERKLSKTDCVLIELLIAKAVTLVTNNSLLKDATMQEAKERNVTVNIFDPLEL*
Ga0171649_125684Ga0171649_1256845F040132MGLLSTIAKGAGSLLGGDTLKDVGNIIDDLHMSGEEKAEAKQKLETILIQAEQAAQEQV
Ga0171649_125703Ga0171649_1257033F054784MKLEPLGKNQTRVIVQIPDEELDFTWDKDIYFSYGQPVLVVNYRNATIHESCERYSKTTSKHLNAFKRMCNRYDDRGGPIDPAELHGREWTIFQANEHRMHTVAGER*
Ga0171649_126604Ga0171649_1266046F005620MKGKIMTADEIAKHVETFKTFCKNNRLRLKEDGDGLPVARAIGKFSDDQFFCNFKSGTIGVYVTRDTQRQFTYLNKKLIKMGCVPTQLGDFEASYDLEWMNIPPVARLLKIK
Ga0171649_130119Ga0171649_1301191F026408MLLFSTVNMEMMIAGNTRRINQAKISAASGLAHFTALNLTYDTLRDRASGLQTLQILPDTQLSTRTHYEVKVHFYPRLSERQYVVESIGYYTKGNKVLALHPIKALFDGGQ*
Ga0171649_134985Ga0171649_1349853F063762LLIRRGKMIKKILLALSMMFVFSCELFEEVDEPTMKLWLDGVEIDVEAEYKQITTYGEEVEYFNDGDSTTYKKKILVIHFQKDAGRVELNKEHYAVVFTDWEGDASNGQPIDLGSYVWPCVCPVCPRKCIHGAESKWVRMEI
Ga0171649_137064Ga0171649_1370641F058454MKVGDLVTYAFQAARWRKGQSVDVGLIVETGKYTGNADVKVLWFGPGRYSPDPITQKSDHLRLVD
Ga0171649_139023Ga0171649_1390235F047104MFKKNQMTLKEIRSYMDAKRKREAKLRDTFTLNGNTYTVNNDPKHQADQLAGYHGR
Ga0171649_139118Ga0171649_1391181F025588MKTYDKFKKELTEDGMLHGEYGTEKPSTTIHYGPNDPEIVKTASVTMAVPKYRLSESEKGCNHTCAHWRDSSWCNEYYFKCDSTYTCDSWKDSGI
Ga0171649_140480Ga0171649_1404801F084710MRDKTNEIVNPIDNGQVITSEVLVSCCGCNEEVRITRDEANEWTDTDWFMC
Ga0171649_141770Ga0171649_1417701F003081MPEPGLVIELREEMFNDTRFGAEVFYMHVRGVDTLFVLSYVHILKKIYLKNYVTAESDG*
Ga0171649_155359Ga0171649_1553591F058432SDTLPLFDSNYQPTNAWHNLVNILWRHLPERNELIHKDTVDFIKDDESFIYLIATNGGPKDWCGGDTERNTLFHNIKEHTKEHIRKGKVLVTIDLSFEGFPMDGTDRLSTIDMGDHPHIAEQLHSRAEIEKFPIENIVFLSANHKDPENYKKWCEKNNKTPVNWILLDWCERAISSDYEHLEDTFEDNFNYKKDNIDKLKHYLCLMRRWKMPRVFHHMALNYFDLLDKGSVSGILSRWDLWSIFPDVDRTKLEMAHEGEVTFSDCATSDDYDFNKNLRHSSLLNVATDEFKTRLRSDLTSLGNNKYLWQVRSSENIKSFLKKLPLVVDRKTFDTLDSFHH
Ga0171649_155677Ga0171649_1556771F017555MVQKIVDPNFHIKTFNVKCDNKLSPLAKTILQSFNFKLYYYVIDDLLYLLKSNPKERDYLLQILNSSVIFLQNNLYVNFFDIYIYDITINEISKFNRFVNEQSESFKFSNTITIKLAYQVKPVPKKL
Ga0171649_158242Ga0171649_1582421F101067MMPNPQLDLHGVRHHEVSNVVARFLERWLNSGVFVEVIVGNSDPMLFEAVKVIQQYGLNYHTGLPKYQGRILVI
Ga0171649_161256Ga0171649_1612561F005524SKERKLEMDIGDKVQHFGTGSVGTVIDSSYEVETPFQQLCVQWEDDLAPHKDSWERREALSIIPHAPYDFNITD*
Ga0171649_161562Ga0171649_1615621F048570MKVGDLVRCRPRNERENYDEWLGLIIGYGMSGQHTVQWVCSDGRGDVEEVNHTP
Ga0171649_162538Ga0171649_1625381F038639MKYNKKQKSLSQPVIDLLSRMSKLVDDGLTPEEAVEYMTDCEPEWRCGKGYPASRGGLRQAKKRLERRLEMMKQVNNGVTTFIN
Ga0171649_164398Ga0171649_1643981F094101MKFDCFYKVTVTTCVPESINFFEDQEIYHWGYYPYHLVIKGVKELYKEGADAVELEM
Ga0171649_165041Ga0171649_1650412F031648ITDCMVELNHNVISFNADTTIKGSHGVVVAVFCSKKGSSGAKCVLKNGGASGTTEFTIFGEIEGNYQDINRRFEDGIYADITGSAEWTVVFK*
Ga0171649_170007Ga0171649_1700072F014929MPKKLDKMDHKCNEKLAKIRKSNVERHAGYENTMKLRANIQRFQRNATYDMKLQRLRGATAQGHIAHHAHKRVAELKNLLAK*
Ga0171649_170954Ga0171649_1709541F001293MMRNSLICKLINVPASPKENNEKKIKKEDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGT*
Ga0171649_174038Ga0171649_1740382F003612NNFKITNSIGSTDNFAGPDVQFFYITLITADGSTVLDVRTELGYNETLHNLQRTILQRGTILYQRVENAATGRLDICMERPGWTAATLQTAIRDMGTSVGTNTKDVSMSTVTETELKLDNS*
Ga0171649_174900Ga0171649_1749001F101495MALPVSIDSIKSTINRRGGGARGNRYAVYVSHPSKGMNSLLKFDPATMLSNLISGDGLNIGDFISDPRD
Ga0171649_178391Ga0171649_1783912F025381KFKLLFWLQCKKRISVKNIIITILLSILLFSCTSYNESKSLNIQSAQLAHSKFNNINNDFSYDEHKSLIVEYGKNSKFPDIK*
Ga0171649_180950Ga0171649_1809501F089913EREGIKQMTKGLNNLNSITPFIFVAWDYYNTGSFVTACVTTCRDFLWPAAVVVAKSFNASPYQMLATNVGGIAWTIYNCFFAEHDDHEAVKEEVSTDFGKAGTLKGKITAYKTRW*
Ga0171649_183313Ga0171649_1833131F005362MMDWTVACRVLHIAATCTSLGGLFYARMVLWPLLPTLPEPQREQFLKACIRRYAWIKWSGVSVVSVTGLIQWSLTWPTVTDQRLYLVCFAVKMTAVLGLVTITGLLALPAEKLQGMQRHRGFWSALNLLCALTILVGAALMRHARQL*
Ga0171649_188986Ga0171649_1889862F052658MGSVAKVFKKAKKVIKKPISKITKGIARGIAKVGKSVMKGVAKLNKKLGPIGMIALSVAM
Ga0171649_191100Ga0171649_1911001F012401MIDGILSLEKAALERLTEDRIASGSLGEEVEEVLSAAGIYWDTLNQEYFSIDAFQRETFERLA
Ga0171649_191118Ga0171649_1911182F008361IELNEATKELEKATSAIEKAETSKARLDASVELKKATARLEGINYLS*
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