| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300013107 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118094 | Gp0172360 | Ga0150956 |
| Sample Name | Marine water column microbial functions of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Georgia Genomics Facility |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 38166613 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal water body → coastal sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | N/A | Depth (m) | 267 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005911 | Metagenome / Metatranscriptome | 386 | Y |
| F021393 | Metagenome / Metatranscriptome | 219 | N |
| F050360 | Metagenome / Metatranscriptome | 145 | Y |
| F053558 | Metagenome / Metatranscriptome | 141 | Y |
| F057456 | Metagenome / Metatranscriptome | 136 | N |
| F058207 | Metagenome / Metatranscriptome | 135 | Y |
| F060454 | Metagenome / Metatranscriptome | 133 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0150956_1019078 | Not Available | 653 | Open in IMG/M |
| Ga0150956_1056978 | All Organisms → cellular organisms → Bacteria | 683 | Open in IMG/M |
| Ga0150956_1057019 | Not Available | 760 | Open in IMG/M |
| Ga0150956_1064201 | Not Available | 744 | Open in IMG/M |
| Ga0150956_1077910 | All Organisms → Viruses → Predicted Viral | 1278 | Open in IMG/M |
| Ga0150956_1106308 | Not Available | 2015 | Open in IMG/M |
| Ga0150956_1111707 | Not Available | 573 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0150956_1019078 | Ga0150956_10190781 | F021393 | TEIAKSDDAVQRVETEKSFQETVKSGFDTLTEVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPKDPYPQGVQAGLDDDRNGEGKPASDKGGLKMQKKSEDDTELIEKAEHTFSTETPRPSAALENVDKSIKDTSLILKDARAEGFEGLSNVARNILNGKYYVPSDDEVRGF* |
| Ga0150956_1056978 | Ga0150956_10569781 | F053558 | AQKKVANAPKVVKAGVAKSGTSSGREEIRNKIGRLRKTGHLREAQDAIRDMINLKSQQKRR* |
| Ga0150956_1057019 | Ga0150956_10570191 | F050360 | MSNAEFGAYQDMLRQCEESMFGGDVQDDDEQWHDAKRLLPPTSHMIWAACPNVVLCAYQTFLLYLDSDGQWRDNTGCLFSRKVNFWQYADVPECNISC* |
| Ga0150956_1064201 | Ga0150956_10642011 | F005911 | KRRLLKLLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNACQMGQSLKGKIDGADINQARLGSHTEDDIEAPIDDVFHNGKFINLSTMVKKAIIIAADDPTATSRSGADTSYDLENSGVLIKYADAGGAVITATNTGDGTDTLVSDVHLFVNLAGTPDTASNSPYTDGEPFYYILMDEVSASLAASDITVDLTQFPAGILATNDGGPQAEVSVILPQDDE* |
| Ga0150956_1077910 | Ga0150956_10779103 | F060454 | RWVAFLIEELKLLEERTNKLDSIENEKDLWFARGQLSVLRQLLYLEEATHRAMEELGI* |
| Ga0150956_1106308 | Ga0150956_11063082 | F058207 | MKHTLFILLASIGLTGCGTVAQIWETGTEVVSNAVDTVVTGTSDLVTAVGTDVVNTGAFIVDTSAGVVEGVSERVDEETDKLDGDNSEGK* |
| Ga0150956_1111707 | Ga0150956_11117071 | F057456 | IPSVAFPIIQDLSLLHLVILCPAYATVRFVDNQTVRQD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |